CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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GI12487
(
Drosophila mojavensis
)
CSD
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00313 (CSD)
IPR002059
FBgn0135244
T17088_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
FBpp0161704
CSD
167
232
RETGIIEKLLHSYGFIQCCERQARLFFHFSQFTGNIDHLKIGDPVEFEMTYDRRTGKPIASQVSKI
FBpp0161704
CSD
254
318
DSANNVLSSSETTGRISYENRGECFFLPYTKDDVEGNVNLRAGDKVSFQIATNQRGNLGACHIRL
FBpp0161704
CSD
326
394
KYRGVVCSMKESFGFIERADVVKEIFFHFSEAEGNVELRPGDDVEFTIQTRSSATVPPQGREFACNITR
FBpp0161704
CSD
498
565
REQGIIASLKEGFGFLRCVDRQVRLFFHFTEVLDTSREIDVNDEVEFTVIQEPGLAYNNSRLQAIRIK
FBpp0161704
CSD
761
821
LYRGFIAVIKENFGFIETLSHDEEVFFHFSNYQGNPNWLELGQEVEYTLAPNGNTSVSGNC
FBpp0161704
CSD
920
986
KKRATVDSIKGQFGFLNFEVEDGKKLFFHMSEVQGNTVALHPGDTVEFSVVTNQRNGKSSACNVLKI
Links
Other
CSD
family RBPs
Other
Drosophila mojavensis
RBPs
11 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
fgenesh1_pg.C_scaffold_49000116
Daphnia pulex
fgenesh1_pg.C_scaffold_49000116
N
0.000