estExt_fgenesh2_pg.C_170094 (Branchiostoma floridae)
CCCH ZF,CCHC ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH)
PF00098 (zf-CCHC) 		IPR000571
IPR001878 		estExt_fgenesh2_pg.C_170094 T00116_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
estExt_fgenesh2_pg.C_170094 CCCH ZF 36 61
estExt_fgenesh2_pg.C_170094 CCCH ZF 63 88
estExt_fgenesh2_pg.C_170094 CCCH ZF 91 116
estExt_fgenesh2_pg.C_170094 CCCH ZF 119 139
estExt_fgenesh2_pg.C_170094 CCCH ZF 144 168
estExt_fgenesh2_pg.C_170094 CCHC ZF 183 200
estExt_fgenesh2_pg.C_170094 CCHC ZF 240 257

Links

Other CCCH ZF,CCHC ZF family RBPs
Other Branchiostoma floridae RBPs

9 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
estExt_fgenesh2_pg.C_1120028 Branchiostoma floridae estExt_fgenesh2_pg.C_1120028 N 1.000
ISCW021476 Ixodes scapularis ISCW021476 N 0.765
amel4_ncbi_hmm9262 Apis mellifera amel4_ncbi_hmm9262 N 0.742
amel4_ncbi_hmm9262 Tribolium castaneum amel4_ncbi_hmm9262 N 0.742
estExt_Genewise1Plus.C_470172 Capitella teleta estExt_Genewise1Plus.C_470172 N 0.725
XP_001189328.1 Strongylocentrotus purpuratus XP_001189328.1 N 0.713
XP_001201949.1 Strongylocentrotus purpuratus XP_001201949.1 N 0.713
e_gw1.98.132.1 Lottia gigantea e_gw1.98.132.1 N 0.708
AGAP013044 Anopheles gambiae AGAP013044 N 0.705