LOC_Os12g18120 (Oryza sativa)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 LOC_Os12g18120 T03973_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
LOC_Os12g18120.1 CCCH ZF 109 135
LOC_Os12g18120.1 CCCH ZF 238 264
LOC_Os12g18120.1 CCCH ZF 286 312
LOC_Os12g18120.1 CCCH ZF 434 460
LOC_Os12g18120.1 CCCH ZF 478 504
LOC_Os12g18120.2 CCCH ZF 109 135
LOC_Os12g18120.2 CCCH ZF 237 263
LOC_Os12g18120.2 CCCH ZF 285 311
LOC_Os12g18120.2 CCCH ZF 433 459
LOC_Os12g18120.2 CCCH ZF 477 503
LOC_Os12g18120.4 CCCH ZF 109 135
LOC_Os12g18120.4 CCCH ZF 237 263
LOC_Os12g18120.4 CCCH ZF 285 311
LOC_Os12g18120.4 CCCH ZF 433 459

Links

Other CCCH ZF family RBPs
Other Oryza sativa RBPs

5 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
BGIOSIBCE036236 Oryza indica BGIOSIBCE036236 N 1.000
GRMZM2G006493 Zea mays GRMZM2G006493 N 0.896
SB08G012360 Sorghum bicolor Sb08g012360 N 0.874
BRADI4G39137 Brachypodium distachyon BRADI4G39137 N 0.859