LOC_Os09g12800 (Oryza sativa)
RanBP ZF,RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00641 (zf-RanBP)
PF00076 (RRM_1) 		IPR001876
IPR000504 		LOC_Os09g12800 T25737_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
LOC_Os09g12800.1 RRM 101 179
LOC_Os09g12800.1 RanBP ZF 229 260
LOC_Os09g12800.1 RanBP ZF 299 327

Links

Other RanBP ZF,RRM family RBPs
Other Oryza sativa RBPs

25 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
BGIOSIBCE029383 Oryza indica BGIOSIBCE029383 N 1.000
LOC_Os07g19560 Oryza sativa LOC_Os07g19560 N 0.979
BGIOSIBCE024476 Oryza indica BGIOSIBCE024476 N 0.979
SB02G032170 Sorghum bicolor Sb02g032170 N 0.957
AC233865.1_FG006 Zea mays AC233865.1_FG006 N 0.950
AC185415.3_FG005 Zea mays AC185415.3_FG005 N 0.943
BRADI1G19280 Brachypodium distachyon BRADI1G19280 N 0.921
GSVIVG00010206001 Vitis vinifera GSVIVG00010206001 N 0.907
mgf016255m Mimulus guttatus mgf016255m N 0.893
PK07290.1 Cannabis sativa PK07290.1 N 0.879
30100.m000780 Ricinus communis 30100.m000780 N 0.879
cassava6410.valid.m1 Manihot esculenta cassava6410.valid.m1 N 0.879
PDK_20s1466551g001 Phoenix dactylifera PDK_20s1466551g001 N 0.879
Glyma12g03260.1 Glycine max Glyma12g03260.1 N 0.872
Glyma11g11060.1 Glycine max Glyma11g11060.1 N 0.872
MDP0000299312 Malus x domestica MDP0000299312 N 0.871
Cucsa.338570 Cucumis sativus Cucsa.338570 N 0.871
MDP0000121074 Malus x domestica MDP0000121074 N 0.871
ppa006646m Prunus persica ppa006646m N 0.865
ppa009031m Prunus persica ppa009031m N 0.865
B9HY23_POPTR Populus trichocarpa POPTR_0010s17780 N 0.864
TAF15 Arabidopsis thaliana AT1G50300-TAIR-G N 0.864
B9HI59_POPTR Populus trichocarpa POPTR_0008s08490 N 0.850
XM_002894200.1 Arabidopsis lyrata scaffold_104754.1 N 0.850
e_gw1.19.421.1 Selaginella moellendorfii e_gw1.19.421.1 N 0.821