ENSCSAVG00000010109 (Ciona savignyi)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSCSAVG00000010109 T36015_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
SNRNP70
M068_0.6 		Homo sapiens RWUCAAG RNAcompete
Ray et al.(2013)
RNCMPT00070 		0.746
snRNP70K
M134_0.6 		Drosophila melanogaster AUCAHG RNAcompete
Ray et al.(2013)
RNCMPT00143 		0.704
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCSAVP00000017176 RRM 106 176

Links

Other RRM family RBPs
Other Ciona savignyi RBPs

48 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ENSCING00000006015 Ciona intestinalis ENSCING00000006015 N 0.811
AGAP006755 Anopheles gambiae AGAP006755 I 0.761
snrnp70 Danio rerio ENSDARG00000077126 I 0.761
LOC100392779 Callithrix jacchus ENSCJAG00000000193 I 0.746
SNRNP70 Cavia porcellus ENSCPOG00000019589 I 0.746
SNRNP70 Tursiops truncatus ENSTTRG00000017099 I 0.746
SNRNP70 Spermophilus tridecemlineatus ENSSTOG00000013988 I 0.746
Ame_R005855 Ailuropoda melanoleuca Ame_R005855 I 0.746
SNRNP70 Canis familiaris ENSCAFG00000003711 I 0.746
SNRNP70 Anolis carolinensis ENSACAG00000013276 I 0.746
RU17_BOVIN Bos taurus ENSBTAG00000001996 I 0.746
Snrnp70 Rattus norvegicus ENSRNOG00000020763 I 0.746
BGIBMGA011988 Bombyx mori BGIBMGA011988 I 0.746
snrnp70 Xenopus tropicalis ENSXETG00000022919 I 0.746
SNRNP70 Loxodonta africana ENSLAFG00000028536 I 0.746
SNRNP70 Myotis lucifugus ENSMLUG00000011766 I 0.746
SNRNP70 Pan troglodytes ENSPTRG00000011277 I 0.746
SNRNP70 Homo sapiens ENSG00000104852 D 0.746
Snrnp70 Dipodomys ordii ENSDORG00000010228 I 0.746
SNRNP70 Erinaceus europaeus ENSEEUG00000005666 I 0.746
SNRNP70 Macaca mulatta ENSMMUG00000004928 I 0.746
SNRNP70 Gorilla gorilla ENSGGOG00000008245 I 0.746
SNRNP70 Oryctolagus cuniculus ENSOCUG00000015081 I 0.746
Snrnp70 Mus musculus ENSMUSG00000063511 I 0.746
ENSPPYG00000010234 Pongo pygmaeus ENSPPYG00000010234 I 0.746
SNRNP70 Ornithorhynchus anatinus ENSOANG00000005213 I 0.746
NCBI_GNO_5600020 Daphnia pulex NCBI_GNO_5600020 I 0.732
SNRNP70 Takifugu rubripes ENSTRUG00000009202 I 0.732
DGIL_AUG5s10626g1p1t1 Acyrtosiphon pisum DGIL_AUG5s10626g1p1t1 I 0.732
SNRNP70 Gasterosteus aculeatus ENSGACG00000000448 I 0.732
XP_001193416.1 Strongylocentrotus purpuratus XP_001193416.1 I 0.718
XP_781203.2 Strongylocentrotus purpuratus XP_781203.2 I 0.718
amel4_ncbi_hmm14979 Apis mellifera amel4_ncbi_hmm14979 I 0.718
GI24161 Drosophila mojavensis FBgn0146884 I 0.718
DGIL_AUG5s10040g3t1 Acyrtosiphon pisum DGIL_AUG5s10040g3t1 I 0.718
ISCW021751 Ixodes scapularis ISCW021751 I 0.718
PHUM022320 Pediculus humanus PHUM022320 I 0.718
nasonia_NCBI_hmm246143 Nasonia vitripennis nasonia_NCBI_hmm246143 I 0.718
GH13577 Drosophila grimshawi FBgn0121053 I 0.704
GF14460 Drosophila ananassae FBgn0091487 I 0.704
GA21298-RA Drosophila pseudoobscura FBgn0081286 I 0.704
snRNP70K Drosophila melanogaster FBgn0016978 D 0.704
GG23559 Drosophila erecta FBgn0115705 I 0.704
GM13669 Drosophila sechellia FBgn0168600 I 0.704
GK18098 Drosophila willistoni FBgn0220097 I 0.704
GJ21434 Drosophila virilis FBgn0208560 I 0.704
GD22521 Drosophila simulans FBgn0193923 I 0.704
GE18384 Drosophila yakuba FBgn0235804 I 0.704