NCBI_GNO_5600020 (Daphnia pulex)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 NCBI_GNO_5600020 T53828_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
SNRNP70
M068_0.6 		Homo sapiens RWUCAAG RNAcompete
Ray et al.(2013)
RNCMPT00070 		0.803
snRNP70K
M134_0.6 		Drosophila melanogaster AUCAHG RNAcompete
Ray et al.(2013)
RNCMPT00143 		0.775
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
NCBI_GNO_5600020 RRM 105 175

Links

Other RRM family RBPs
Other Daphnia pulex RBPs

50 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
nasonia_NCBI_hmm246143 Nasonia vitripennis nasonia_NCBI_hmm246143 I 0.845
amel4_ncbi_hmm14979 Apis mellifera amel4_ncbi_hmm14979 I 0.845
ISCW021751 Ixodes scapularis ISCW021751 I 0.831
DGIL_AUG5s10626g1p1t1 Acyrtosiphon pisum DGIL_AUG5s10626g1p1t1 I 0.817
snrnp70 Danio rerio ENSDARG00000077126 I 0.817
SNRNP70 Takifugu rubripes ENSTRUG00000009202 I 0.817
PHUM022320 Pediculus humanus PHUM022320 I 0.817
SNRNP70 Gasterosteus aculeatus ENSGACG00000000448 I 0.817
Snrnp70 Mus musculus ENSMUSG00000063511 I 0.803
BGIBMGA011988 Bombyx mori BGIBMGA011988 I 0.803
SNRNP70 Myotis lucifugus ENSMLUG00000011766 I 0.803
SNRNP70 Loxodonta africana ENSLAFG00000028536 I 0.803
SNRNP70 Ornithorhynchus anatinus ENSOANG00000005213 I 0.803
Snrnp70 Rattus norvegicus ENSRNOG00000020763 I 0.803
SNRNP70 Tursiops truncatus ENSTTRG00000017099 I 0.803
snrnp70 Xenopus tropicalis ENSXETG00000022919 I 0.803
SNRNP70 Spermophilus tridecemlineatus ENSSTOG00000013988 I 0.803
SNRNP70 Gorilla gorilla ENSGGOG00000008245 I 0.803
ENSPPYG00000010234 Pongo pygmaeus ENSPPYG00000010234 I 0.803
SNRNP70 Pan troglodytes ENSPTRG00000011277 I 0.803
SNRNP70 Oryctolagus cuniculus ENSOCUG00000015081 I 0.803
SNRNP70 Macaca mulatta ENSMMUG00000004928 I 0.803
SNRNP70 Homo sapiens ENSG00000104852 D 0.803
RU17_BOVIN Bos taurus ENSBTAG00000001996 I 0.803
AGAP006755 Anopheles gambiae AGAP006755 I 0.803
Ame_R005855 Ailuropoda melanoleuca Ame_R005855 I 0.803
LOC100392779 Callithrix jacchus ENSCJAG00000000193 I 0.803
SNRNP70 Canis familiaris ENSCAFG00000003711 I 0.803
Snrnp70 Dipodomys ordii ENSDORG00000010228 I 0.803
SNRNP70 Erinaceus europaeus ENSEEUG00000005666 I 0.803
SNRNP70 Cavia porcellus ENSCPOG00000019589 I 0.803
SNRNP70 Anolis carolinensis ENSACAG00000013276 I 0.789
GI24161 Drosophila mojavensis FBgn0146884 I 0.789
GH13577 Drosophila grimshawi FBgn0121053 I 0.775
GM13669 Drosophila sechellia FBgn0168600 I 0.775
GJ21434 Drosophila virilis FBgn0208560 I 0.775
GK18098 Drosophila willistoni FBgn0220097 I 0.775
GG23559 Drosophila erecta FBgn0115705 I 0.775
GD22521 Drosophila simulans FBgn0193923 I 0.775
DGIL_AUG5s10040g3t1 Acyrtosiphon pisum DGIL_AUG5s10040g3t1 I 0.775
GE18384 Drosophila yakuba FBgn0235804 I 0.775
GF14460 Drosophila ananassae FBgn0091487 I 0.775
snRNP70K Drosophila melanogaster FBgn0016978 D 0.775
GA21298-RA Drosophila pseudoobscura FBgn0081286 I 0.775
ENSCSAVG00000010109 Ciona savignyi ENSCSAVG00000010109 I 0.732
SNRNP70 Pteropus vampyrus ENSPVAG00000009578 I 0.732
e_gw.153.81.1 Nematostella vectensis e_gw.153.81.1 I 0.718
XP_001193416.1 Strongylocentrotus purpuratus XP_001193416.1 I 0.718
XP_781203.2 Strongylocentrotus purpuratus XP_781203.2 I 0.718
Minc09130 Meloidogyne incognita Minc09130 I 0.718