| Species |
Num Motifs |
Total Direct |
Total Inferred |
Total RBPs |
Pct RBPs |
Species Name |
Kingdom |
|---|
| Homo_sapiens | 271 | 189 | 82 | 465 | 58.3 | Human | Metazoa |
| Drosophila_melanogaster | 92 | 66 | 26 | 237 | 38.8 | Fruit fly | Metazoa |
| Caenorhabditis_elegans | 63 | 36 | 27 | 232 | 27.2 | C. elegans | Metazoa |
| Cannabis_sativa | 89 | 32 | 57 | 406 | 21.9 | Marijuana | Plants |
| Leishmania_major | 34 | 21 | 13 | 152 | 22.4 | Leishmania major | Protists |
| Trypanosoma_brucei | 29 | 18 | 11 | 149 | 19.5 | Trypanosoma brucei | Protists |
| Danio_rerio | 216 | 12 | 204 | 478 | 45.2 | Zebrafish | Metazoa |
| Plasmodium_falciparum | 15 | 12 | 3 | 104 | 14.4 | Malaria | Protists |
| Tetraodon_nigroviridis | 189 | 12 | 177 | 388 | 48.7 | Green puffer | Metazoa |
| Xenopus_tropicalis | 185 | 10 | 175 | 444 | 41.7 | Western clawed frog | Metazoa |
| Saccharomyces_cerevisiae | 16 | 9 | 7 | 92 | 17.4 | Bakers yeast | Fungi |
| Caenorhabditis_briggsae | 58 | 7 | 51 | 266 | 21.8 | C. briggsae | Metazoa |
| Mus_musculus | 209 | 7 | 202 | 424 | 49.3 | Mouse | Metazoa |
| Neurospora_crassa | 19 | 6 | 13 | 116 | 16.4 | Red bread mold | Fungi |
| Schizosaccharomyces_pombe | 16 | 6 | 10 | 110 | 14.5 | Fission yeast | Fungi |
| Trichomonas_vaginalis | 19 | 6 | 13 | 212 | 9.0 | Trichomonas vaginalis | Protists |
| Arabidopsis_thaliana | 105 | 5 | 100 | 469 | 22.4 | Mouse-ear cress | Plants |
| Gallus_gallus | 152 | 5 | 147 | 310 | 49.0 | Chicken | Metazoa |
| Schistosoma_mansoni | 40 | 5 | 35 | 203 | 19.7 | Blood fluke | Metazoa |
| Dictyostelium_discoideum | 13 | 4 | 9 | 143 | 9.1 | Slime mold | Protists |
| Ostreococcus_tauri | 13 | 4 | 9 | 126 | 10.3 | Green algae | Alga |
| Physcomitrella_patens | 64 | 4 | 60 | 406 | 15.8 | Moss | Plants |
| Schizophyllum_commune | 17 | 4 | 13 | 140 | 12.1 | Split Gill | Fungi |
| Schmidtea_mediterranea | 75 | 4 | 71 | 458 | 16.4 | Freshwater planarian | Metazoa |
| Meleagris_gallopavo | 133 | 3 | 130 | 278 | 47.8 | Common turkey | Metazoa |
| Monodelphis_domestica | 209 | 3 | 206 | 400 | 52.2 | Short-tailed gray opossum | Metazoa |
| Nematostella_vectensis | 66 | 3 | 63 | 324 | 20.4 | Starlet sea anemone | Metazoa |
| Aspergillus_nidulans | 16 | 2 | 14 | 111 | 14.4 | Aspergillus | Fungi |
| Puccinia_graminis | 15 | 2 | 13 | 219 | 6.8 | Stem rust | Fungi |
| Xenopus_laevis | 223 | 2 | 221 | 373 | 59.8 | African clawed frog | Metazoa |
| Batrachochytrium_dendrobatidis | 16 | 1 | 15 | 124 | 12.9 | Chytrid targetting amphibians | Fungi |
| Naegleria_gruberi | 5 | 1 | 4 | 324 | 1.5 | Amoeba | Protists |
| Phytophthora_ramorum | 15 | 1 | 14 | 274 | 5.5 | Sudden Oak Death | Alga |
| Rhizopus_oryzae | 19 | 1 | 18 | 277 | 6.9 | Rhizopus oryzae | Fungi |
| Thalassiosira_pseudonana | 8 | 1 | 7 | 148 | 5.4 | Marine diatom | Alga |
| Acanthocheilonema_viteae | 47 | 0 | 47 | 207 | 22.7 | Parasitic nematode | Metazoa |
| Acremonium_chrysogenum | 18 | 0 | 18 | 107 | 16.8 | Acremonium chrysogenum | Fungi |
| Acyrthosiphon_pisum | 77 | 0 | 77 | 498 | 15.5 | Pea aphid | Metazoa |
| Aedes_aegypti | 68 | 0 | 68 | 265 | 25.7 | Yellowfever mosquito | Metazoa |
| Aegilops_tauschii | 81 | 0 | 81 | 431 | 18.8 | Tausch_s goatgrass | Plants |
| Agaricus_bisporus | 16 | 0 | 16 | 197 | 8.1 | Common (button) mushroom | Fungi |
| Ailuropoda_melanoleuca | 202 | 0 | 202 | 383 | 52.7 | Panda | Metazoa |
| Albugo_laibachii | 15 | 0 | 15 | 206 | 7.3 | Water mold - pathogen of Arabidopsis thaliana | Alga |
| Alligator_sinensis | 163 | 0 | 163 | 338 | 48.2 | Chinese alligator | Metazoa |
| Allomyces_macrogynus | 15 | 0 | 15 | 268 | 5.6 | Zoosporic fungus | Fungi |
| Alternaria_brassicicola | 10 | 0 | 10 | 109 | 9.2 | Plant pathogen (brassica dark leaf spot) | Fungi |
| Amanita_muscaria | 16 | 0 | 16 | 177 | 9.0 | Fly agaric mushroom | Fungi |
| Amborella_trichopoda | 70 | 0 | 70 | 345 | 20.3 | New Caledonian shrub | Plants |
| Amphimedon_queenslandica | 41 | 0 | 41 | 616 | 6.7 | Sponge | Metazoa |
| Anas_platyrhynchos | 144 | 0 | 144 | 294 | 49.0 | Wild duck | Metazoa |
| Ancylostoma_caninum | 59 | 0 | 59 | 289 | 20.4 | Hookworm nematode | Metazoa |
| Ancylostoma_ceylanicum | 47 | 0 | 47 | 193 | 24.4 | Parasitic roundworm (hookworm) | Metazoa |
| Ancylostoma_duodenale | 54 | 0 | 54 | 261 | 20.7 | Parasitic nematode - Old World hookworm | Metazoa |
| Angiostrongylus_cantonensis | 31 | 0 | 31 | 130 | 23.8 | Parasitic nematode (roundworm) that causes Angiostrongyliasis | Metazoa |
| Angiostrongylus_costaricensis | 41 | 0 | 41 | 135 | 30.4 | Parasitic nematode | Metazoa |
| Anisakis_simplex | 32 | 0 | 32 | 208 | 15.4 | Herring worm | Metazoa |
| Anncaliia_algerae | 1 | 0 | 1 | 59 | 1.7 | Aquatic microsporidium that infects mosquitoes | Fungi |
| Anolis_carolinensis | 158 | 0 | 158 | 418 | 37.8 | Green anole | Metazoa |
| Anopheles_albimanus | 58 | 0 | 58 | 203 | 28.6 | Mosquito | Metazoa |
| Anopheles_arabiensis | 61 | 0 | 61 | 219 | 27.9 | Mosquito | Metazoa |
| Anopheles_atroparvus | 60 | 0 | 60 | 204 | 29.4 | Mosquito | Metazoa |
| Anopheles_christyi | 53 | 0 | 53 | 183 | 29.0 | Mosquito | Metazoa |
| Anopheles_coluzzii | 57 | 0 | 57 | 191 | 29.8 | Mosquito | Metazoa |
| Anopheles_culicifacies | 64 | 0 | 64 | 212 | 30.2 | Mosquito | Metazoa |
| Anopheles_darlingi | 60 | 0 | 60 | 193 | 31.1 | Mosquito | Metazoa |
| Anopheles_dirus | 59 | 0 | 59 | 212 | 27.8 | Mosquito | Metazoa |
| Anopheles_epiroticus | 63 | 0 | 63 | 214 | 29.4 | Mosquito | Metazoa |
| Anopheles_farauti | 62 | 0 | 62 | 209 | 29.7 | Mosquito | Metazoa |
| Anopheles_funestus | 67 | 0 | 67 | 223 | 30.0 | Mosquito | Metazoa |
| Anopheles_gambiae | 62 | 0 | 62 | 221 | 28.1 | Mosquito (seven types) | Metazoa |
| Anopheles_maculatus | 45 | 0 | 45 | 178 | 25.3 | Mosquito | Metazoa |
| Anopheles_melas | 61 | 0 | 61 | 223 | 27.4 | Mosquito | Metazoa |
| Anopheles_merus | 53 | 0 | 53 | 191 | 27.7 | Mosquito | Metazoa |
| Anopheles_minimus | 66 | 0 | 66 | 216 | 30.6 | Mosquito | Metazoa |
| Anopheles_quadriannulatus | 63 | 0 | 63 | 218 | 28.9 | Mosquito | Metazoa |
| Anopheles_sinensis | 47 | 0 | 47 | 178 | 26.4 | Mosquito | Metazoa |
| Anopheles_stephensi | 63 | 0 | 63 | 222 | 28.4 | Mosquito | Metazoa |
| Apis_mellifera | 68 | 0 | 68 | 218 | 31.2 | Honey bee | Metazoa |
| Aptenodytes_forsteri | 145 | 0 | 145 | 293 | 49.5 | Emperor penguin | Metazoa |
| Aquilegia_coerulea | 87 | 0 | 87 | 405 | 21.5 | Aquilegia flower | Plants |
| Arabidopsis_lyrata | 114 | 0 | 114 | 543 | 21.0 | Mustard | Plants |
| Arthrobotrys_oligospora | 14 | 0 | 14 | 119 | 11.8 | Predacious fungus of nematodes | Fungi |
| Arthroderma_benhamiae | 13 | 0 | 13 | 97 | 13.4 | Ringworm | Fungi |
| Arthroderma_otae | 14 | 0 | 14 | 104 | 13.5 | Zoophilic dermatophyte fungus | Fungi |
| Ascaris_lumbricoides | 43 | 0 | 43 | 150 | 28.7 | Giant roundworm of humans | Metazoa |
| Ascaris_suum | 53 | 0 | 53 | 234 | 22.6 | Large roundworm of pigs | Metazoa |
| Ashbya_gossypii | 12 | 0 | 12 | 89 | 13.5 | Plant pathogen (fungus) | Fungi |
| Aspergillus_carbonarius | 15 | 0 | 15 | 105 | 14.3 | Black spore mold | Fungi |
| Aspergillus_clavatus | 13 | 0 | 13 | 114 | 11.4 | Aspergillus | Fungi |
| Aspergillus_flavus | 12 | 0 | 12 | 108 | 11.1 | Aspergillus | Fungi |
| Aspergillus_fumigatus | 13 | 0 | 13 | 104 | 12.5 | Cause of aspergillosis | Fungi |
| Aspergillus_niger | 14 | 0 | 14 | 112 | 12.5 | Aspergillus (black mold) | Fungi |
| Aspergillus_oryzae | 16 | 0 | 16 | 115 | 13.9 | Koji mold (makes sake) | Fungi |
| Aspergillus_ruber | 13 | 0 | 13 | 119 | 10.9 | Mold | Fungi |
| Aspergillus_terreus | 15 | 0 | 15 | 104 | 14.4 | Aspergillus terreus | Fungi |
| Astyanax_mexicanus | 218 | 0 | 218 | 439 | 49.7 | Blind cave fish | Metazoa |
| Atta_cephalotes | 64 | 0 | 64 | 231 | 27.7 | Leafcutter ant | Metazoa |
| Aureobasidium_melanogenum | 13 | 0 | 13 | 115 | 11.3 | Black, yeast-like fungus | Fungi |
| Aureobasidium_pullulans | 13 | 0 | 13 | 114 | 11.4 | Black, yeast-like fungus | Fungi |
| Aureobasidium_subglaciale | 13 | 0 | 13 | 114 | 11.4 | Black, yeast-like fungus | Fungi |
| Aureococcus_anophagefferens | 11 | 0 | 11 | 142 | 7.7 | Brown tide blooms | Alga |
| Babesia_bovis | 8 | 0 | 8 | 85 | 9.4 | Cattle Parasite | Protists |
| Baudoinia_compniacensis | 12 | 0 | 12 | 112 | 10.7 | Whiskey fungus | Fungi |
| Beauveria_bassiana | 17 | 0 | 17 | 112 | 15.2 | Fungus - cause of white muscardine disease | Fungi |
| Bigelowiella_natans | 11 | 0 | 11 | 375 | 2.9 | Chlorarachniophyte | Alga |
| Biomphalaria_glabrata | 41 | 0 | 41 | 154 | 26.6 | Air-breathing freshwater snail | Metazoa |
| Bipolaris_maydis | 12 | 0 | 12 | 109 | 11.0 | Southern corn leaf blight | Fungi |
| Bipolaris_oryzae | 12 | 0 | 12 | 111 | 10.8 | Cause of rice brown spot disease | Fungi |
| Bipolaris_sorokiniana | 12 | 0 | 12 | 120 | 10.0 | Cause of several cereal diseases | Fungi |
| Bipolaris_victoriae | 11 | 0 | 11 | 112 | 9.8 | Fungal plant pathogen - cause of victoria blight | Fungi |
| Bipolaris_zeicola | 11 | 0 | 11 | 115 | 9.6 | Bipolaris zeicola | Fungi |
| Blastomyces_dermatitidis | 15 | 0 | 15 | 117 | 12.8 | Causes blastomycosis | Fungi |
| Blumeria_graminis | 15 | 0 | 15 | 102 | 14.7 | Barley powdery mildew | Fungi |
| Boechera_stricta | 110 | 0 | 110 | 451 | 24.4 | Drummond_s rockcress | Plants |
| Bombyx_mori | 59 | 0 | 59 | 211 | 28.0 | Silk moth | Metazoa |
| Bos_grunniens | 208 | 0 | 208 | 395 | 52.7 | Yak | Metazoa |
| Bos_taurus | 205 | 0 | 205 | 385 | 53.2 | Bovine | Metazoa |
| Botryobasidium_botryosum | 13 | 0 | 13 | 159 | 8.2 | Botryobasidium botryosum | Fungi |
| Botrytis_cinerea | 18 | 0 | 18 | 120 | 15.0 | Botrytis cinerea | Fungi |
| Brachypodium_distachyon | 94 | 0 | 94 | 477 | 19.7 | Purple false brome (grass) | Plants |
| Branchiostoma_floridae | 116 | 0 | 116 | 1172 | 9.9 | Florida lancelet (fish) | Metazoa |
| Brassica_oleracea | 188 | 0 | 188 | 946 | 19.9 | Wild cabbage | Plants |
| Brassica_rapa | 179 | 0 | 179 | 733 | 24.4 | Field mustard | Plants |
| Brettanomyces_bruxellensis | 5 | 0 | 5 | 70 | 7.1 | Yeast - used in Belgian beers | Fungi |
| Brugia_malayi | 51 | 0 | 51 | 221 | 23.1 | B. malayi (nematode) | Metazoa |
| Brugia_timori | 29 | 0 | 29 | 174 | 16.7 | Human filarial parasitic nematode (roundworm) - causes Timor filariasis | Metazoa |
| Buceros_rhinoceros | 114 | 0 | 114 | 241 | 47.3 | Rhinoceros hornbill | Metazoa |
| Bursaphelenchus_xylophilus | 38 | 0 | 38 | 197 | 19.3 | Pine wood nematode | Metazoa |
| Byssochlamys_spectabilis | 14 | 0 | 14 | 105 | 13.3 | Common environmental mold | Fungi |
| Caenorhabditis_brenneri | 80 | 0 | 80 | 316 | 25.3 | C. brenneri (nematode) | Metazoa |
| Caenorhabditis_japonica | 60 | 0 | 60 | 474 | 12.7 | C. japonica (nematode) | Metazoa |
| Caenorhabditis_remanei | 72 | 0 | 72 | 396 | 18.2 | C. remanei (nematode) | Metazoa |
| Callithrix_jacchus | 300 | 0 | 300 | 499 | 60.1 | Common marmoset | Metazoa |
| Calypte_anna | 145 | 0 | 145 | 298 | 48.7 | Anna_s hummingbird | Metazoa |
| Camponotus_floridanus | 61 | 0 | 61 | 291 | 21.0 | Florida carpenter ant | Metazoa |
| Candida_albicans | 14 | 0 | 14 | 175 | 8.0 | Yeast | Fungi |
| Candida_dubliniensis | 7 | 0 | 7 | 96 | 7.3 | Fungal pathogen | Fungi |
| Candida_glabrata | 16 | 0 | 16 | 90 | 17.8 | Human pathogen (fungus) | Fungi |
| Candida_guilliermondii | 7 | 0 | 7 | 79 | 8.9 | Yeast | Fungi |
| Candida_lusitaniae | 7 | 0 | 7 | 83 | 8.4 | Yeast | Fungi |
| Candida_maltosa | 8 | 0 | 8 | 85 | 9.4 | Yeast | Fungi |
| Candida_orthopsilosis | 9 | 0 | 9 | 86 | 10.5 | Yeast | Fungi |
| Candida_parapsilosis | 8 | 0 | 8 | 84 | 9.5 | Yeast | Fungi |
| Candida_tenuis | 7 | 0 | 7 | 77 | 9.1 | Yeast | Fungi |
| Candida_tropicalis | 9 | 0 | 9 | 86 | 10.5 | Yeast | Fungi |
| Canis_familiaris | 227 | 0 | 227 | 411 | 55.2 | Dog | Metazoa |
| Capitella_teleta | 68 | 0 | 68 | 402 | 16.9 | Segmented worm | Metazoa |
| Capronia_coronata | 12 | 0 | 12 | 108 | 11.1 | Black yeast | Fungi |
| Capronia_epimyces | 12 | 0 | 12 | 108 | 11.1 | Black yeast | Fungi |
| Capronia_semiimmersa | 14 | 0 | 14 | 114 | 12.3 | Black yeast | Fungi |
| Capsaspora_owczarzaki | 10 | 0 | 10 | 139 | 7.2 | Protist (snail symbiont) | Protists |
| Capsella_grandiflora | 103 | 0 | 103 | 449 | 22.9 | Close relative of Arabidopsis thaliana | Plants |
| Capsella_rubella | 110 | 0 | 110 | 468 | 23.5 | Pink shepherd_s purse | Plants |
| Carica_papaya | 81 | 0 | 81 | 363 | 22.3 | Papaya | Plants |
| Cavia_porcellus | 200 | 0 | 200 | 378 | 52.9 | Guinea pig | Metazoa |
| Ceriporiopsis_subvermispora | 15 | 0 | 15 | 138 | 10.9 | White-rot fungus | Fungi |
| Chaetomium_globosum | 19 | 0 | 19 | 152 | 12.5 | Mold allergen | Fungi |
| Chaetomium_thermophilum | 18 | 0 | 18 | 108 | 16.7 | Thermophilic filamentous fungus | Fungi |
| Chelonia_mydas | 145 | 0 | 145 | 299 | 48.5 | Green sea turtle | Metazoa |
| Chlamydomonas_reinhardtii | 17 | 0 | 17 | 132 | 12.9 | Chlamydomonas | Plants |
| Chlorella_NC64A | 17 | 0 | 17 | 173 | 9.8 | Microalgae | Alga |
| Chlorella_vulgaris | 18 | 0 | 18 | 143 | 12.6 | Green algae | Alga |
| Chlorocebus_sabaeus | 209 | 0 | 209 | 380 | 55.0 | Green monkey | Metazoa |
| Choloepus_hoffmanni | 117 | 0 | 117 | 253 | 46.2 | Hoffmanns two-fingered sloth | Metazoa |
| Cicer_arietinum | 107 | 0 | 107 | 490 | 21.8 | Chickpea | Metazoa |
| Cimex_lectularius | 64 | 0 | 64 | 226 | 28.3 | Bed bug | Metazoa |
| Ciona_intestinalis | 59 | 0 | 59 | 210 | 28.1 | Transparent sea squirt | Metazoa |
| Ciona_savignyi | 47 | 0 | 47 | 163 | 28.8 | Pacific transparent sea squirt | Metazoa |
| Citrullus_lanatus | 90 | 0 | 90 | 337 | 26.7 | Watermelon | Plants |
| Citrus_clementina | 94 | 0 | 94 | 393 | 23.9 | Clementine tree | Plants |
| Citrus_sinensis | 94 | 0 | 94 | 384 | 24.5 | Orange tree | Plants |
| Cladophialophora_bantiana | 12 | 0 | 12 | 112 | 10.7 | Dematiaceous fungus - causes brain abscesses | Fungi |
| Cladophialophora_carrionii | 14 | 0 | 14 | 111 | 12.6 | Cause of chromoblastomycosis | Fungi |
| Cladophialophora_immunda | 12 | 0 | 12 | 117 | 10.3 | Black yeast | Fungi |
| Cladophialophora_psammophila | 14 | 0 | 14 | 114 | 12.3 | Black yeast | Fungi |
| Cladophialophora_yegresii | 13 | 0 | 13 | 108 | 12.0 | Cladophialophora yegresii | Fungi |
| Claviceps_purpurea | 17 | 0 | 17 | 115 | 14.8 | Fungus that grows on the ears of cereal plants | Fungi |
| Clavispora_lusitaniae | 7 | 0 | 7 | 83 | 8.4 | Yeast | Fungi |
| Clonorchis_sinensis | 48 | 0 | 48 | 216 | 22.2 | Chinese liver fluke | Metazoa |
| Coccidioides_immitis | 14 | 0 | 14 | 111 | 12.6 | Cause of Valley Fever | Fungi |
| Coccidioides_posadasii | 14 | 0 | 14 | 115 | 12.2 | Cause of Valley Fever | Fungi |
| Coccomyxa_subellipsoidea_C169 | 18 | 0 | 18 | 146 | 12.3 | Green microalga | Alga |
| Cochliobolus_heterostrophus_C5 | 11 | 0 | 11 | 119 | 9.2 | Southern Corn Leaf Blight | Fungi |
| Colletotrichum_fioriniae | 18 | 0 | 18 | 110 | 16.4 | Cause of bitter rot | Fungi |
| Colletotrichum_gloeosporioides | 18 | 0 | 18 | 109 | 16.5 | Cause of bitter rot | Fungi |
| Colletotrichum_graminicola | 17 | 0 | 17 | 110 | 15.5 | Glomerella graminicola, causes plant cankers (anthracnose) on maize and wheat | Fungi |
| Colletotrichum_higginsianum | 20 | 0 | 20 | 116 | 17.2 | Cause of anthracnose disease on many plants | Fungi |
| Colletotrichum_orbiculare | 15 | 0 | 15 | 109 | 13.8 | Plant pathogen of melons and cucumber | Fungi |
| Colletotrichum_sublineola | 17 | 0 | 17 | 106 | 16.0 | Causes anthracnose disease on sorghum | Fungi |
| Coniosporium_apollinis | 14 | 0 | 14 | 113 | 12.4 | Rock-inhabiting fungus | Fungi |
| Coprinopsis_cinerea | 16 | 0 | 16 | 142 | 11.3 | Inky cap mushroom | Fungi |
| Cordyceps_militaris | 15 | 0 | 15 | 101 | 14.9 | Mushroom used in traditional Asian medical practice | Fungi |
| Crassostrea_gigas | 57 | 0 | 57 | 1024 | 5.6 | Pacific oyster | Metazoa |
| Cryphonectria_parasitica | 17 | 0 | 17 | 107 | 15.9 | Chestnut blight fungus | Fungi |
| Cryptococcus_gattii | 7 | 0 | 7 | 109 | 6.4 | Encapsulated yeast found primarily in tropical and subtropical climates | Fungi |
| Cryptococcus_neoformans | 8 | 0 | 8 | 114 | 7.0 | Cryptococcus neoformans | Fungi |
| Cryptosporidium_hominis | 4 | 0 | 4 | 68 | 5.9 | Protist (human parasite) | Protists |
| Cryptosporidium_muris | 3 | 0 | 3 | 86 | 3.5 | Protist (human parasite) | Protists |
| Cryptosporidium_parvum | 6 | 0 | 6 | 78 | 7.7 | Cryptosporidium parvum | Protists |
| Cucumis_sativus | 90 | 0 | 90 | 331 | 27.2 | Cucumber | Plants |
| Culex_pipiens | 65 | 0 | 65 | 387 | 16.8 | C. pipiens (mosquito) | Metazoa |
| Culex_quinquefasciatus | 66 | 0 | 66 | 299 | 22.1 | C. quinquefasciatus (mosquito) | Metazoa |
| Cyanidioschyzon_merolae | 3 | 0 | 3 | 54 | 5.6 | Red alga | Plants |
| Cylicostephanus_goldi | 12 | 0 | 12 | 101 | 11.9 | Parasitic nematode that lives in the large intestine of horses | Metazoa |
| Cyphellophora_europaea | 13 | 0 | 13 | 112 | 11.6 | Black yeast-like fungus | Fungi |
| Dacryopinax_sp | 14 | 0 | 14 | 109 | 12.8 | Jelly fungus - causes extensive decay in dead wood | Fungi |
| Dactylellina_haptotyla | 15 | 0 | 15 | 115 | 13.0 | Nematode-trapping fungus | Fungi |
| Danaus_plexippus | 68 | 0 | 68 | 237 | 28.7 | Monarch butterfly | Metazoa |
| Daphnia_pulex | 56 | 0 | 56 | 474 | 11.8 | Water flea | Metazoa |
| Dasypus_novemcinctus | 268 | 0 | 268 | 481 | 55.7 | Nine-banded armadillo | Metazoa |
| Debaryomyces_hansenii | 9 | 0 | 9 | 95 | 9.5 | Salt loving yeast | Fungi |
| Dendroctonus_ponderosae | 67 | 0 | 67 | 214 | 31.3 | Mountain pine beetle | Metazoa |
| Dichomitus_squalens | 4 | 0 | 4 | 68 | 5.9 | Western red rot | Fungi |
| Dictyocaulus_viviparus | 48 | 0 | 48 | 172 | 27.9 | Bovine lungworm | Metazoa |
| Dictyostelium_purpureum | 13 | 0 | 13 | 141 | 9.2 | Slime mold | Protists |
| Diphyllobothrium_latum | 29 | 0 | 29 | 230 | 12.6 | Broad fish tapeworm - can cause Diphyllobothriasis | Metazoa |
| Dipodomys_ordii | 150 | 0 | 150 | 295 | 50.8 | Ords kangaroo rat | Metazoa |
| Dirofilaria_immitis | 48 | 0 | 48 | 219 | 21.9 | Dog heartworm - parasitic roundworm | Metazoa |
| Dothistroma_septosporum | 15 | 0 | 15 | 115 | 13.0 | Cause of red band needle blight | Fungi |
| Dracunculus_medinensis | 32 | 0 | 32 | 149 | 21.5 | Guinea worm - nematode that causes dracunculiasis | Metazoa |
| Drechslerella_stenobrocha | 12 | 0 | 12 | 74 | 16.2 | Constricting-ring-forming fungus | Fungi |
| Drosophila_ananassae | 83 | 0 | 83 | 212 | 39.2 | D. ananassae (fruit fly) | Metazoa |
| Drosophila_erecta | 85 | 0 | 85 | 215 | 39.5 | D. erecta (fruit fly) | Metazoa |
| Drosophila_grimshawi | 75 | 0 | 75 | 213 | 35.2 | D. grimshawi (fruit fly) | Metazoa |
| Drosophila_mojavensis | 78 | 0 | 78 | 208 | 37.5 | D. mojavensis (fruit fly) | Metazoa |
| Drosophila_persimilis | 74 | 0 | 74 | 239 | 31.0 | D. persimilis (fruit fly) | Metazoa |
| Drosophila_pseudoobscura | 76 | 0 | 76 | 232 | 32.8 | Fruit fly | Metazoa |
| Drosophila_sechellia | 90 | 0 | 90 | 220 | 40.9 | D. sechellia (fruit fly) | Metazoa |
| Drosophila_simulans | 82 | 0 | 82 | 195 | 42.1 | D. simulans (fruit fly) | Metazoa |
| Drosophila_virilis | 75 | 0 | 75 | 214 | 35.0 | D. virilis (fruit fly) | Metazoa |
| Drosophila_willistoni | 84 | 0 | 84 | 229 | 36.7 | D. willistoni (fruit fly) | Metazoa |
| Drosophila_yakuba | 84 | 0 | 84 | 214 | 39.3 | D. yakuba (fruit fly) | Metazoa |
| Echinococcus_canadensis | 31 | 0 | 31 | 204 | 15.2 | Parasite species of cyclophyllid tapeworms | Metazoa |
| Echinococcus_multilocularis | 32 | 0 | 32 | 218 | 14.7 | Tapeworm | Metazoa |
| Echinops_telfairi | 167 | 0 | 167 | 330 | 50.6 | Lesser hedgehog tenrec | Metazoa |
| Echinostoma_caproni | 22 | 0 | 22 | 152 | 14.5 | Parasitic intestinal fluke | Metazoa |
| Eimeria_tenella | 8 | 0 | 8 | 140 | 5.7 | Causes cecal coccidiosis in young poultry | Protists |
| Elaeophora_elaphi | 34 | 0 | 34 | 169 | 20.1 | Nematode parasite found in the blood vessels of the liver in Red Deer | Metazoa |
| Emiliania_huxleyi | 20 | 0 | 20 | 507 | 3.9 | EHUX | Alga |
| Encephalitozoon_cuniculi | 1 | 0 | 1 | 41 | 2.4 | Encephalitozoon cuniculi | Fungi |
| Encephalitozoon_hellem | 1 | 0 | 1 | 38 | 2.6 | Microsporidian | Fungi |
| Encephalitozoon_intestinalis | 1 | 0 | 1 | 41 | 2.4 | Protist (human parasite); smallest known genome | Fungi |
| Endocarpon_pusillum | 12 | 0 | 12 | 113 | 10.6 | Lichen-forming fungus | Fungi |
| Entamoeba_invadens | 1 | 0 | 1 | 156 | 0.6 | Entamoeba (animal parasite) | Protists |
| Enterobius_vermicularis | 46 | 0 | 46 | 184 | 25.0 | Pinworm - parasitic nematode | Metazoa |
| Enterocytozoon_bieneusi | 6 | 0 | 6 | 58 | 10.3 | Microsporidia | Fungi |
| Equus_caballus | 171 | 0 | 171 | 345 | 49.6 | Horse | Metazoa |
| Eremothecium_cymbalariae | 12 | 0 | 12 | 81 | 14.8 | Close relative of Ashbya gossypii | Fungi |
| Erinaceus_europaeus | 137 | 0 | 137 | 265 | 51.7 | Western European hedgehog | Metazoa |
| Erysiphe_necator | 11 | 0 | 11 | 127 | 8.7 | Causes powdery mildew of grape | Fungi |
| Eucalyptus_grandis | 101 | 0 | 101 | 447 | 22.6 | Flooded gum tree | Plants |
| Eutrema_salsugineum | 102 | 0 | 102 | 488 | 20.9 | Salt cress | Plants |
| Eutypa_lata | 16 | 0 | 16 | 101 | 15.8 | Causes dead arm of grapevine | Fungi |
| Exophiala_aquamarina | 13 | 0 | 13 | 110 | 11.8 | Anamorphic fungus hosted by fish | Fungi |
| Exophiala_dermatitidis | 12 | 0 | 12 | 109 | 11.0 | Thermophilic black yeast | Fungi |
| Exophiala_mesophila | 13 | 0 | 13 | 108 | 12.0 | Alkylbenzene-degrading black yeast | Fungi |
| Exophiala_oligosperma | 12 | 0 | 12 | 110 | 10.9 | Black yeast pathogenic to humans | Fungi |
| Exophiala_sideris | 12 | 0 | 12 | 109 | 11.0 | Black yeast isolated from environments polluted with toxic alkyl benzenes and arsenic | Fungi |
| Exophiala_spinifera | 12 | 0 | 12 | 114 | 10.5 | Black yeast | Fungi |
| Exophiala_xenobiotica | 13 | 0 | 13 | 113 | 11.5 | Black yeast | Fungi |
| Fasciola_hepatica | 35 | 0 | 35 | 199 | 17.6 | Common liver fluke - parasitic trematode | Metazoa |
| Felis_catus | 201 | 0 | 201 | 412 | 48.8 | Cat | Metazoa |
| Fibroporia_radiculosa | 16 | 0 | 16 | 121 | 13.2 | Copper-tolerant fungus that causes brown rot decay of wood | Fungi |
| Ficedula_albicollis | 144 | 0 | 144 | 309 | 46.6 | Collared flycatcher | Metazoa |
| Fomitopsis_pinicola | 15 | 0 | 15 | 137 | 10.9 | Red-belt conk mushroom | Fungi |
| Fonsecaea_pedrosoi | 12 | 0 | 12 | 119 | 10.1 | Major causative agent of chromoblastomycosis | Fungi |
| Fragaria_vesca | 97 | 0 | 97 | 489 | 19.8 | Wild strawberry | Plants |
| Fragilariopsis_cylindrus | 6 | 0 | 6 | 163 | 3.7 | Planktonic diatom, grows on ice | Alga |
| Fusarium_fujikuroi | 18 | 0 | 18 | 120 | 15.0 | Causes bakanae in rice | Fungi |
| Fusarium_graminearum | 18 | 0 | 18 | 123 | 14.6 | Gibberella zeae, cause of wheat headblight | Fungi |
| Fusarium_oxysporum | 17 | 0 | 17 | 113 | 15.0 | Soil microbe digesting lignin | Fungi |
| Fusarium_pseudograminearum | 18 | 0 | 18 | 118 | 15.3 | Causes crown rot of wheat | Fungi |
| Fusarium_solani | 17 | 0 | 17 | 107 | 15.9 | Filamentous fungus | Fungi |
| Fusarium_verticillioides | 18 | 0 | 18 | 109 | 16.5 | Gibberella fujikuroi, cause of bakanae disease in rice | Fungi |
| Gadus_morhua | 189 | 0 | 189 | 400 | 47.2 | Atlantic cod | Metazoa |
| Gaeumannomyces_graminis | 15 | 0 | 15 | 113 | 13.3 | Causes black spots on rice | Fungi |
| Galerina_marginata | 16 | 0 | 16 | 163 | 9.8 | Poisonous "little brown mushroom" | Fungi |
| Gasterosteus_aculeatus | 206 | 0 | 206 | 413 | 49.9 | Three-spined stickleback | Metazoa |
| Geospiza_fortis | 144 | 0 | 144 | 298 | 48.3 | Medium ground finch | Metazoa |
| Glarea_lozoyensis | 11 | 0 | 11 | 78 | 14.1 | Fungus - overproducer of pneumocandin | Fungi |
| Globodera_pallida | 31 | 0 | 31 | 270 | 11.5 | Nematode - pathogen of potatoes | Metazoa |
| Gloeophyllum_trabeum | 16 | 0 | 16 | 150 | 10.7 | Brown rot fungus | Fungi |
| Glycine_max | 221 | 0 | 221 | 989 | 22.3 | Soybean | Plants |
| Gongylonema_pulchrum | 43 | 0 | 43 | 256 | 16.8 | Nematode - cause of Gongylonema infection in humans | Metazoa |
| Gorilla_gorilla | 211 | 0 | 211 | 394 | 53.6 | Gorilla | Metazoa |
| Gossypium_raimondii | 178 | 0 | 178 | 626 | 28.4 | Diploid cotton tree | Plants |
| Grosmannia_clavigera | 18 | 0 | 18 | 104 | 17.3 | Blue stain fungus | Fungi |
| Guillardia_theta | 13 | 0 | 13 | 277 | 4.7 | Cryptomonad | Alga |
| Gymnopus_luxurians | 7 | 0 | 7 | 114 | 6.1 | Mushroom that grows in wood chips | Fungi |
| Haemonchus_contortus | 65 | 0 | 65 | 325 | 20.0 | Barber pole worm | Metazoa |
| Haemonchus_placei | 35 | 0 | 35 | 179 | 19.6 | Parasitic roundworm that infects cattle and sheep | Metazoa |
| Halyomorpha_halys | 71 | 0 | 71 | 201 | 35.3 | Stink bug | Metazoa |
| Harpegnathos_saltator | 59 | 0 | 59 | 332 | 17.8 | Jerdon_s jumping ant | Metazoa |
| Hebeloma_cylindrosporum | 16 | 0 | 16 | 144 | 11.1 | Mushroom | Fungi |
| Heliconius_melpomene | 62 | 0 | 62 | 200 | 31.0 | Postman butterfly | Metazoa |
| Heligmosomoides_bakeri | 31 | 0 | 31 | 223 | 13.9 | Parasitic nematode | Metazoa |
| Helobdella_robusta | 98 | 0 | 98 | 442 | 22.2 | Leech | Metazoa |
| Heterobasidion_annosum | 15 | 0 | 15 | 157 | 9.6 | Annosum root rot | Fungi |
| Heterobasidion_irregulare | 17 | 0 | 17 | 233 | 7.3 | Tree root rotting pathogenic fungus | Fungi |
| Heterorhabditis_bacteriophora | 24 | 0 | 24 | 125 | 19.2 | Beneficial nematode (used in gardening) | Metazoa |
| Histoplasma_capsulatum | 12 | 0 | 12 | 112 | 10.7 | Histoplasma capsulatum | Fungi |
| Hordeum_vulgare | 64 | 0 | 64 | 355 | 18.0 | Barley | Plants |
| Hyaloperonospora_arabidopsidis | 15 | 0 | 15 | 157 | 9.6 | Causes downy mildew of Arabidopsis thaliana | Alga |
| Hydatigera_taeniaeformis | 28 | 0 | 28 | 168 | 16.7 | Feline tapeworm | Metazoa |
| Hydnomerulius_pinastri | 4 | 0 | 4 | 70 | 5.7 | Fungus | Fungi |
| Hydra_magnipapillata | 51 | 0 | 51 | 293 | 17.4 | Fresh water polp | Metazoa |
| Hymenolepis_diminuta | 19 | 0 | 19 | 168 | 11.3 | Rat tapeworm | Metazoa |
| Hymenolepis_microstoma | 31 | 0 | 31 | 204 | 15.2 | Rodent tapeworm | Metazoa |
| Hymenolepis_nana | 32 | 0 | 32 | 200 | 16.0 | Dwarf tapeworm (infects humans) | Metazoa |
| Ictidomys_tridecemlineatus | 208 | 0 | 208 | 377 | 55.2 | Striped gopher | Metazoa |
| Ixodes_scapularis | 45 | 0 | 45 | 214 | 21.0 | Deer tick | Metazoa |
| Jaapia_argillacea | 17 | 0 | 17 | 158 | 10.8 | Jaapia argillacea | Fungi |
| Kazachstania_africana | 13 | 0 | 13 | 85 | 15.3 | Ascomycete yeast | Fungi |
| Kazachstania_naganishii | 12 | 0 | 12 | 81 | 14.8 | Ascomycete yeast | Fungi |
| Kluyveromyces_lactis | 11 | 0 | 11 | 81 | 13.6 | Yeast | Fungi |
| Kluyveromyces_thermotolerans | 12 | 0 | 12 | 90 | 13.3 | K. thermotolerans | Fungi |
| Kluyveromyces_waltii | 11 | 0 | 11 | 92 | 12.0 | K. waltii (yeast) | Fungi |
| Komagataella_pastoris | 8 | 0 | 8 | 85 | 9.4 | Methylotrophic yeast | Fungi |
| Kuraishia_capsulata | 8 | 0 | 8 | 97 | 8.2 | Budding yeast | Fungi |
| Laccaria_amethystina | 18 | 0 | 18 | 167 | 10.8 | Amethyst deceiver (mushroom) | Fungi |
| Laccaria_bicolor | 14 | 0 | 14 | 144 | 9.7 | Deceiver (small tan colored mushroom) | Fungi |
| Lachancea_kluyveri | 16 | 0 | 16 | 87 | 18.4 | L. kluyveri (budding yeast) | Fungi |
| Lachancea_lanzarotensis | 11 | 0 | 11 | 88 | 12.5 | Grape yeast | Fungi |
| Lachancea_thermotolerans | 12 | 0 | 12 | 90 | 13.3 | Grape yeast | Fungi |
| Latimeria_chalumnae | 170 | 0 | 170 | 383 | 44.4 | West Indian Ocean coelacanth | Metazoa |
| Leersia_perrieri | 99 | 0 | 99 | 434 | 22.8 | Madagascan grass | Plants |
| Leishmania_braziliensis | 34 | 0 | 34 | 157 | 21.7 | Protist (human parasite) | Protists |
| Leishmania_infantum | 34 | 0 | 34 | 158 | 21.5 | Protist (human parasite) | Protists |
| Leishmania_mexicana | 34 | 0 | 34 | 157 | 21.7 | Protist (human parasite) | Protists |
| Lepisosteus_oculatus | 170 | 0 | 170 | 383 | 44.4 | Spotted gar | Metazoa |
| Leptinotarsa_decemlineata | 69 | 0 | 69 | 346 | 19.9 | Colorado potato beetle | Metazoa |
| Leptosphaeria_maculans | 14 | 0 | 14 | 110 | 12.7 | Fungal pathogen - cause of blackleg disease on Brassica | Fungi |
| Linum_usitatissimum | 176 | 0 | 176 | 701 | 25.1 | Flax | Plants |
| Litomosoides_sigmodontis | 50 | 0 | 50 | 213 | 23.5 | Nematode (parasite of rodents) | Metazoa |
| Loa_loa | 46 | 0 | 46 | 207 | 22.2 | L. loa (nematode) | Metazoa |
| Lodderomyces_elongisporus | 5 | 0 | 5 | 92 | 5.4 | Yeast | Fungi |
| Lottia_gigantea | 61 | 0 | 61 | 313 | 19.5 | Owl limpet (sea snail) | Metazoa |
| Lotus_japonicus | 96 | 0 | 96 | 576 | 16.7 | Wild legume | Plants |
| Loxodonta_africana | 197 | 0 | 197 | 377 | 52.3 | African elephant | Metazoa |
| Lucilia_cuprina | 83 | 0 | 83 | 314 | 26.4 | Metazoa | Metazoa |
| Lutzomyia_longipalpis | 55 | 0 | 55 | 183 | 30.1 | Sand fly | Metazoa |
| Macaca_fascicularis | 217 | 0 | 217 | 403 | 53.8 | Crab-eating macaque | Metazoa |
| Macaca_mulatta | 227 | 0 | 227 | 417 | 54.4 | Rhesus macaque | Metazoa |
| Macrophomina_phaseolina | 13 | 0 | 13 | 119 | 10.9 | Fungal pathogen - cause of charcoal rot on many plants | Fungi |
| Macropus_eugenii | 143 | 0 | 143 | 286 | 50.0 | Tammar wallaby | Metazoa |
| Magnaporthe_oryzae | 18 | 0 | 18 | 136 | 13.2 | Magnaporthe grisea, rice blast fungus, many others | Fungi |
| Magnaporthe_poae | 13 | 0 | 13 | 96 | 13.5 | Fungus - cause of summer patch (turfgrass disease) | Fungi |
| Malassezia_globosa | 9 | 0 | 9 | 88 | 10.2 | Yeast (human symbiont) | Fungi |
| Malassezia_sympodialis | 7 | 0 | 7 | 72 | 9.7 | Fungal pathogen - cause of atopic eczema and granulomatous dermatitis | Fungi |
| Malus_domestica | 240 | 0 | 240 | 970 | 24.7 | Apple | Plants |
| Manihot_esculenta | 242 | 0 | 242 | 877 | 27.6 | Cassava (woody shrub) | Plants |
| Marssonina_brunnea | 15 | 0 | 15 | 114 | 13.2 | Fungal pathogen - cause of Marssonina leaf spot | Fungi |
| Medicago_truncatula | 125 | 0 | 125 | 521 | 24.0 | Barrel Clover (legume) | Plants |
| Megaselia_scalaris | 26 | 0 | 26 | 106 | 24.5 | Humpbacked fly | Metazoa |
| Melampsora_laricipopulina | 14 | 0 | 14 | 146 | 9.6 | Cause of poplar rust | Fungi |
| Melitaea_cinxia | 43 | 0 | 43 | 175 | 24.6 | Glanville fritillary (butterfly) | Metazoa |
| Meloidogyne_floridensis | 40 | 0 | 40 | 326 | 12.3 | Root-knot nematode | Metazoa |
| Meloidogyne_hapla | 28 | 0 | 28 | 239 | 11.7 | Northern root-knot nematode | Metazoa |
| Meloidogyne_incognita | 49 | 0 | 49 | 315 | 15.6 | Southern root-knot nematode | Metazoa |
| Mesocestoides_corti | 28 | 0 | 28 | 178 | 15.7 | Tapeworm - parasite of mice | Metazoa |
| Metarhizium_acridum | 15 | 0 | 15 | 105 | 14.3 | Fungus - pathogenic to locusts | Fungi |
| Metarhizium_album | 17 | 0 | 17 | 105 | 16.2 | Fungus - pathogenic to leafhoppers | Fungi |
| Metarhizium_anisopliae | 18 | 0 | 18 | 113 | 15.9 | Fungus - parasitic to many insects | Fungi |
| Metarhizium_brunneum | 17 | 0 | 17 | 110 | 15.5 | Mitosporic fungus | Fungi |
| Metarhizium_guizhouense | 17 | 0 | 17 | 121 | 14.0 | Fungus | Fungi |
| Metarhizium_majus | 18 | 0 | 18 | 113 | 15.9 | Fungus - virulent against beetles | Fungi |
| Metarhizium_robertsii | 17 | 0 | 17 | 118 | 14.4 | Fungus - infects cockroaches | Fungi |
| Meyerozyma_guilliermondii | 7 | 0 | 7 | 79 | 8.9 | Fungus | Fungi |
| Microbotryum_violaceum | 11 | 0 | 11 | 121 | 9.1 | Anther smut fungus | Fungi |
| Microcebus_murinus | 145 | 0 | 145 | 286 | 50.7 | Lesser mouse lemur | Metazoa |
| Micromonas_pusilla | 13 | 0 | 13 | 188 | 6.9 | Flagellar marine algae | Alga |
| Micromonas_sp_RCC299 | 11 | 0 | 11 | 186 | 5.9 | Photosynthetic picophytoplankton | Alga |
| Microsporidia_sp | 6 | 0 | 6 | 69 | 8.7 | Spore-forming unicellular parasites | Fungi |
| Microsporum_canis | 14 | 0 | 14 | 105 | 13.3 | Cause of Tinea capitis (scalp ringworm) | Fungi |
| Microsporum_gypseum | 12 | 0 | 12 | 112 | 10.7 | Mold, may cause ringworm | Fungi |
| Millerozyma_farinosa | 16 | 0 | 16 | 176 | 9.1 | Ascomycete yeast | Fungi |
| Mimulus_guttatus | 123 | 0 | 123 | 484 | 25.4 | Common monkey flower | Plants |
| Mixia_osmundae | 11 | 0 | 11 | 116 | 9.5 | Fungus | Fungi |
| Mnemiopsis_leidyi | 28 | 0 | 28 | 320 | 8.8 | Warty comb jelly | Metazoa |
| Moniliophthora_perniciosa | 5 | 0 | 5 | 87 | 5.7 | Plant pathogen | Fungi |
| Moniliophthora_roreri | 17 | 0 | 17 | 299 | 5.7 | Fungus - causes frosty pod rot disease of cacao | Fungi |
| Monosiga_brevicollis | 14 | 0 | 14 | 137 | 10.2 | Choanoflagellate | Protists |
| Mucor_circinelloides | 16 | 0 | 16 | 187 | 8.6 | Cause of zygomycosis | Fungi |
| Musa_acuminata | 167 | 0 | 167 | 614 | 27.2 | Banana | Plants |
| Musca_domestica | 84 | 0 | 84 | 231 | 36.4 | Housefly | Metazoa |
| Mustela_putorius_furo | 216 | 0 | 216 | 388 | 55.7 | Ferret | Metazoa |
| Myceliophthora_thermophila | 17 | 0 | 17 | 106 | 16.0 | Thielavia heterothallica | Fungi |
| Mycosphaerella_fijiensis | 13 | 0 | 13 | 99 | 13.1 | Black sigatoka | Fungi |
| Mycosphaerella_graminicola | 16 | 0 | 16 | 101 | 15.8 | Wheat pathogen | Fungi |
| Myotis_brandtii | 235 | 0 | 235 | 445 | 52.8 | Brandt_s bat | Metazoa |
| Myotis_lucifugus | 227 | 0 | 227 | 448 | 50.7 | Little brown bat | Metazoa |
| Nasonia_vitripennis | 56 | 0 | 56 | 379 | 14.8 | Parasitoid wasp | Metazoa |
| Naumovozyma_castellii | 17 | 0 | 17 | 94 | 18.1 | Yeast | Fungi |
| Naumovozyma_dairenensis | 14 | 0 | 14 | 102 | 13.7 | Yeast | Fungi |
| Necator_americanus | 51 | 0 | 51 | 192 | 26.6 | New World hookworm | Metazoa |
| Nectria_haematococca | 17 | 0 | 17 | 107 | 15.9 | Fusarium solani | Fungi |
| Neofusicoccum_parvum | 15 | 0 | 15 | 108 | 13.9 | Sac fungus | Fungi |
| Neosartorya_fischeri | 15 | 0 | 15 | 109 | 13.8 | Fungal pathogen (related to Aspergillus) | Fungi |
| Neospora_caninum | 6 | 0 | 6 | 147 | 4.1 | Protist (animal parasite) | Protists |
| Neurospora_discreta | 17 | 0 | 17 | 110 | 15.5 | Mold | Fungi |
| Neurospora_tetrasperma | 18 | 0 | 18 | 113 | 15.9 | Mold | Fungi |
| Nippostrongylus_brasiliensis | 37 | 0 | 37 | 234 | 15.8 | Gastrointestinal roundworm | Metazoa |
| Nomascus_leucogenys | 187 | 0 | 187 | 360 | 51.9 | Northern white-cheeked gibbon | Metazoa |
| Nosema_bombycis | 1 | 0 | 1 | 50 | 2.0 | Microsporidian that affects silkworms | Fungi |
| Nosema_ceranae | 1 | 0 | 1 | 29 | 3.4 | Microsporidian that affects bees | Fungi |
| Ochotona_princeps | 146 | 0 | 146 | 339 | 43.1 | Southern American pika | Metazoa |
| Octopus_bimaculoides | 55 | 0 | 55 | 312 | 17.6 | Octopus | Metazoa |
| Oesophagostomum_dentatum | 42 | 0 | 42 | 225 | 18.7 | Nodule worm | Metazoa |
| Ogataea_parapolymorpha | 8 | 0 | 8 | 93 | 8.6 | Yeast that can grow on methanol | Fungi |
| Oidiodendron_maius | 13 | 0 | 13 | 112 | 11.6 | Fungus that associates with shrub roots | Fungi |
| Oikopleura_dioica | 34 | 0 | 34 | 316 | 10.8 | Tunicate | Metazoa |
| Onchocerca_flexuosa | 39 | 0 | 39 | 214 | 18.2 | Parasitic roundworm | Metazoa |
| Onchocerca_ochengi | 54 | 0 | 54 | 243 | 22.2 | Parasitic roundworm | Metazoa |
| Onchocerca_volvulus | 50 | 0 | 50 | 210 | 23.8 | Nematode causing river blindness | Metazoa |
| Ophiocordyceps_sinensis | 14 | 0 | 14 | 95 | 14.7 | Fungus that parasitizes larvae of ghost moths | Fungi |
| Ophiostoma_piceae_uamh | 14 | 0 | 14 | 104 | 13.5 | Wood-staining fungus | Fungi |
| Ophisaurus_gracilis | 142 | 0 | 142 | 307 | 46.3 | Burmese glass lizard | Metazoa |
| Opisthorchis_viverrini | 47 | 0 | 47 | 208 | 22.6 | Southeast Asian liver fluke | Metazoa |
| Oreochromis_niloticus | 215 | 0 | 215 | 421 | 51.1 | Nile tilapia | Metazoa |
| Ornithorhynchus_anatinus | 158 | 0 | 158 | 311 | 50.8 | Duckbill platypus | Metazoa |
| Oryctolagus_cuniculus | 219 | 0 | 219 | 409 | 53.5 | Rabbit | Metazoa |
| Oryza_barthii | 91 | 0 | 91 | 470 | 19.4 | African wild rice | Plants |
| Oryza_brachyantha | 89 | 0 | 89 | 432 | 20.6 | Wild rice | Plants |
| Oryza_glaberrima | 89 | 0 | 89 | 459 | 19.4 | African rice | Plants |
| Oryza_glumaepatula | 95 | 0 | 95 | 484 | 19.6 | Wild rice | Plants |
| Oryza_indica | 99 | 0 | 99 | 635 | 15.6 | Rice | Plants |
| Oryza_longistaminata | 73 | 0 | 73 | 372 | 19.6 | Longstamen rice | Plants |
| Oryza_meridionalis | 80 | 0 | 80 | 442 | 18.1 | Wild rice | Plants |
| Oryza_nivara | 94 | 0 | 94 | 478 | 19.7 | Wild rice | Plants |
| Oryza_punctata | 97 | 0 | 97 | 489 | 19.8 | Red rice | Plants |
| Oryza_rufipogon | 92 | 0 | 92 | 492 | 18.7 | Brownbeard rice | Plants |
| Oryza_sativa | 94 | 0 | 94 | 451 | 20.8 | Rice | Plants |
| Oryzias_latipes | 196 | 0 | 196 | 397 | 49.4 | Medaka fish | Metazoa |
| Ostreococcus_lucimarinus | 16 | 0 | 16 | 132 | 12.1 | Single-celled alga | Plants |
| Ostreococcus_RCC809 | 12 | 0 | 12 | 137 | 8.8 | Single-celled alga | Alga |
| Otolemur_garnettii | 237 | 0 | 237 | 432 | 54.9 | Small-eared galago | Metazoa |
| Ovis_aries | 227 | 0 | 227 | 430 | 52.8 | Sheep | Metazoa |
| Oxytricha_trifallax | 3 | 0 | 3 | 248 | 1.2 | Ciliate protozoan | Protists |
| Panicum_virgatum | 195 | 0 | 195 | 1449 | 13.5 | Switchgrass | Plants |
| Pan_troglodytes | 200 | 0 | 200 | 369 | 54.2 | Chimpanzee | Metazoa |
| Papio_anubis | 225 | 0 | 225 | 395 | 57.0 | Olive baboon | Metazoa |
| Paracoccidioides_brasiliensis | 14 | 0 | 14 | 117 | 12.0 | Cause of paracoccidioidomycosis | Fungi |
| Paracoccidioides_sp_lutzii | 13 | 0 | 13 | 135 | 9.6 | Dimorphic ascomycete fungus | Fungi |
| Paramecium_tetraurelia | 11 | 0 | 11 | 442 | 2.5 | Ciliate | Protists |
| Parascaris_equorum | 24 | 0 | 24 | 115 | 20.9 | Equine roundworm | Metazoa |
| Parastrongyloides_trichosuri | 34 | 0 | 34 | 182 | 18.7 | Nematode parasite of mammals | Metazoa |
| Paxillus_involutus | 6 | 0 | 6 | 89 | 6.7 | Brown roll-rim mushroom | Fungi |
| Paxillus_rubicundulus | 17 | 0 | 17 | 148 | 11.5 | Brown mushroom | Fungi |
| Pediculus_humanus | 66 | 0 | 66 | 197 | 33.5 | Head louse | Metazoa |
| Pelodiscus_sinensis | 168 | 0 | 168 | 328 | 51.2 | Chinese softshell turtle | Metazoa |
| Penicillium_chrysogenum | 13 | 0 | 13 | 114 | 11.4 | Mold | Fungi |
| Penicillium_digitatum | 14 | 0 | 14 | 110 | 12.7 | Common postharvest fungus disease of citrus called green mold | Fungi |
| Penicillium_expansum | 11 | 0 | 11 | 101 | 10.9 | Post harvest rot that infects apples | Fungi |
| Penicillium_italicum | 13 | 0 | 13 | 109 | 11.9 | Post harvest disease commonly associated with citrus fruits | Fungi |
| Penicillium_marneffei | 15 | 0 | 15 | 125 | 12.0 | Mold- cause of penicilliosis | Fungi |
| Penicillium_oxalicum | 15 | 0 | 15 | 110 | 13.6 | Penicillium oxalicum | Fungi |
| Penicillium_rubens | 13 | 0 | 13 | 114 | 11.4 | Source of Penicillin | Fungi |
| Penicillium_solitum | 12 | 0 | 12 | 109 | 11.0 | Mesophilic fungus present in marine sediments from Antarctica | Fungi |
| Pestalotiopsis_fici | 17 | 0 | 17 | 119 | 14.3 | Pathogen of Ficus carica | Fungi |
| Petromyzon_marinus | 82 | 0 | 82 | 186 | 44.1 | Lamprey | Metazoa |
| Phaeodactylum_tricornutum | 5 | 0 | 5 | 152 | 3.3 | Diatom | Alga |
| Phaeosphaeria_nodorum | 13 | 0 | 13 | 105 | 12.4 | Glume blotch fungus | Fungi |
| Phanerochaete_carnosa | 15 | 0 | 15 | 131 | 11.5 | Plant pathogen infecting plane trees | Fungi |
| Phanerochaete_chrysosporium | 16 | 0 | 16 | 163 | 9.8 | "White rot", crust fungus | Fungi |
| Phlebiopsis_gigantea | 16 | 0 | 16 | 140 | 11.4 | Fungus that causes white rot of conifer logs and stumps | Fungi |
| Phlebotomus_papatasi | 55 | 0 | 55 | 169 | 32.5 | Sand fly | Metazoa |
| Phoenix_dactylifera | 93 | 0 | 93 | 397 | 23.4 | True date palm | Plants |
| Phycomyces_blakesleeanus | 19 | 0 | 19 | 204 | 9.3 | Algal fungi | Fungi |
| Phytophthora_capsici | 13 | 0 | 13 | 170 | 7.6 | Plant pathogen | Protists |
| Phytophthora_infestans | 15 | 0 | 15 | 190 | 7.9 | Potato blight water mold | Alga |
| Phytophthora_kernoviae | 15 | 0 | 15 | 118 | 12.7 | Infects European beech and Rhododendron ponticum | Alga |
| Phytophthora_lateralis | 10 | 0 | 10 | 139 | 7.2 | Causes cedar root disease | Alga |
| Phytophthora_parasitica | 14 | 0 | 14 | 230 | 6.1 | Black shank - infects tobacco, onion, and strawberries | Alga |
| Phytophthora_sojae | 13 | 0 | 13 | 355 | 3.7 | Soybean stem and root rot | Alga |
| Pichia_kudriavzevii | 7 | 0 | 7 | 95 | 7.4 | Yeast | Fungi |
| Pichia_pastoris | 8 | 0 | 8 | 85 | 9.4 | Yeast | Fungi |
| Pichia_stipitis | 8 | 0 | 8 | 84 | 9.5 | Yeast related to cerevisiae | Fungi |
| Piloderma_croceum | 19 | 0 | 19 | 170 | 11.2 | Fungus | Fungi |
| Piriformospora_indica | 15 | 0 | 15 | 131 | 11.5 | Endophytic root-colonizing fungus | Fungi |
| Pisolithus_microcarpus | 17 | 0 | 17 | 198 | 8.6 | Fungus - symbiotic with trees | Fungi |
| Pisolithus_tinctorius | 17 | 0 | 17 | 243 | 7.0 | Fungus - symbiotic with trees | Fungi |
| Plasmodium_berghei | 15 | 0 | 15 | 102 | 14.7 | Protist (animal parasite) | Protists |
| Plasmodium_chabaudi | 17 | 0 | 17 | 103 | 16.5 | Protist (animal parasite) | Protists |
| Plasmodium_knowlesi | 15 | 0 | 15 | 105 | 14.3 | Protist (animal parasite) | Protists |
| Plasmodium_vivax | 16 | 0 | 16 | 103 | 15.5 | Protist (animal parasite) | Protists |
| Plasmodium_yoelii | 16 | 0 | 16 | 97 | 16.5 | Protist (animal parasite) | Protists |
| Pleurotus_ostreatus | 15 | 0 | 15 | 164 | 9.1 | Oyster mushroom | Fungi |
| Plicaturopsis_crispa | 2 | 0 | 2 | 21 | 9.5 | Fungus | Fungi |
| Pneumocystis_carinii | 33 | 0 | 33 | 204 | 16.2 | Form of pneumonia | Fungi |
| Pneumocystis_murina | 15 | 0 | 15 | 98 | 15.3 | Fungus, first isolated from lab mice | Fungi |
| Podospora_anserina | 17 | 0 | 17 | 117 | 14.5 | Filamentous fungus | Fungi |
| Poecilia_formosa | 216 | 0 | 216 | 443 | 48.8 | Amazon molly | Metazoa |
| Pogona_vitticeps | 170 | 0 | 170 | 351 | 48.4 | Central bearded dragon | Metazoa |
| Polysphondylium_pallidum | 10 | 0 | 10 | 160 | 6.2 | Cellular slime mold | Protists |
| Pongo_abelii | 210 | 0 | 210 | 381 | 55.1 | Sumatran orangutan | Metazoa |
| Populus_trichocarpa | 172 | 0 | 172 | 679 | 25.3 | Black cottonwood/california poplar | Plants |
| Postia_placenta | 4 | 0 | 4 | 91 | 4.4 | Brown rot fungus | Fungi |
| Pristionchus_exspectatus | 36 | 0 | 36 | 232 | 15.5 | Non-parasitic nematode | Metazoa |
| Pristionchus_pacificus | 38 | 0 | 38 | 261 | 14.6 | P. pacificus (nematode) | Metazoa |
| Procavia_capensis | 151 | 0 | 151 | 303 | 49.8 | Cape hyrax | Metazoa |
| Protopolystoma_xenopodis | 33 | 0 | 33 | 191 | 17.3 | Flatworm | Metazoa |
| Prunus_mume | 95 | 0 | 95 | 418 | 22.7 | Plum tree | Plants |
| Prunus_persica | 103 | 0 | 103 | 474 | 21.7 | Peach tree | Plants |
| Pseudocercospora_fijiensis | 14 | 0 | 14 | 119 | 11.8 | Cause of leaf-spot disease of banana plants | Fungi |
| Pseudogymnoascus_destructans | 17 | 0 | 17 | 157 | 10.8 | Cause of white-nose syndrome in bats | Fungi |
| Pseudogymnoascus_pannorum | 14 | 0 | 14 | 109 | 12.8 | Soil-dwelling fungu implicated in the human disease geomycosis | Fungi |
| Pseudozyma_antarctica | 12 | 0 | 12 | 87 | 13.8 | Potentially useful for production of functional glycolipids | Fungi |
| Pseudozyma_aphidis | 8 | 0 | 8 | 88 | 9.1 | Environmental Basidiomycete yeast - occasionally infects humans | Fungi |
| Pseudozyma_brasiliensis | 11 | 0 | 11 | 107 | 10.3 | Yeast | Fungi |
| Pseudozyma_flocculosa | 6 | 0 | 6 | 73 | 8.2 | Powdery mildew antagonist | Fungi |
| Pseudozyma_hubeiensis | 14 | 0 | 14 | 109 | 12.8 | Yeast | Fungi |
| Pteropus_vampyrus | 173 | 0 | 173 | 336 | 51.5 | Large flying fox | Metazoa |
| Puccinia_triticina | 11 | 0 | 11 | 295 | 3.7 | Wheat leaf rust | Fungi |
| Pyrenophora_teres | 14 | 0 | 14 | 133 | 10.5 | Fungal pathogen of barley | Fungi |
| Pyrenophora_triticirepentis | 13 | 0 | 13 | 127 | 10.2 | Fungus | Fungi |
| Pythium_aphanidermatum | 11 | 0 | 11 | 153 | 7.2 | Water mold - plant pathogen | Alga |
| Pythium_arrhenomanes | 11 | 0 | 11 | 141 | 7.8 | Water mold - plant pathogen | Alga |
| Pythium_irregulare | 11 | 0 | 11 | 160 | 6.9 | Water mold - plant pathogen | Alga |
| Pythium_iwayamai | 9 | 0 | 9 | 150 | 6.0 | Water mold - causes snow-rot disease of cereal plants | Alga |
| Pythium_ultimum | 12 | 0 | 12 | 210 | 5.7 | Water mold - causes root rot diseases | Alga |
| Pythium_vexans | 13 | 0 | 13 | 170 | 7.6 | Water mold - infects citruses | Alga |
| Rattus_norvegicus | 216 | 0 | 216 | 406 | 53.2 | Rat | Metazoa |
| Rhabditophanes_kr3021 | 32 | 0 | 32 | 186 | 17.2 | Nematode | Metazoa |
| Rhinocladiella_mackenziei | 13 | 0 | 13 | 117 | 11.1 | Potential agent of cerebral phaeohyphomycosis | Fungi |
| Rhizoctonia_solani | 17 | 0 | 17 | 144 | 11.8 | Plant pathogen - cause of collar rot, root rot, damping off and wire stem | Fungi |
| Rhizophagus_irregularis | 18 | 0 | 18 | 248 | 7.3 | Fungi that play vital functions in the phosphorus cycle | Fungi |
| Rhodnius_prolixus | 64 | 0 | 64 | 236 | 27.1 | Kissing bug | Metazoa |
| Rhodosporidium_toruloides | 9 | 0 | 9 | 120 | 7.5 | Yeast - linked to bovine mastitis | Fungi |
| Rhodotorula_glutinis | 2 | 0 | 2 | 42 | 4.8 | Pigmented yeast - infects human bloodstream | Fungi |
| Ricinus_communis | 92 | 0 | 92 | 379 | 24.3 | Castor oil plant | Plants |
| Romanomermis_culicivorax | 48 | 0 | 48 | 242 | 19.8 | Nematode | Metazoa |
| Rozella_allomycis | 7 | 0 | 7 | 106 | 6.6 | One of the earliest diverging lineages of fungi | Fungi |
| Saccharomyces_arboricola | 11 | 0 | 11 | 62 | 17.7 | Yeast that grows in tree bark | Fungi |
| Saccharomyces_bayanus | 14 | 0 | 14 | 88 | 15.9 | S. bayanus (yeast) | Fungi |
| Saccharomyces_castellii | 14 | 0 | 14 | 78 | 17.9 | S. castellii | Fungi |
| Saccharomyces_kudriavzevii | 4 | 0 | 4 | 56 | 7.1 | Yeast found in wine and beer | Fungi |
| Saccharomyces_mikatae | 13 | 0 | 13 | 93 | 14.0 | S. mikatae (yeast) | Fungi |
| Saccharomyces_paradoxus | 13 | 0 | 13 | 86 | 15.1 | S. paradoxus (yeast) | Fungi |
| Saccharomycetaceae_sp_ashbya_aceri | 12 | 0 | 12 | 81 | 14.8 | Yeast | Fungi |
| Saccoglossus_kowalevskii | 65 | 0 | 65 | 448 | 14.5 | Acorn worm | Metazoa |
| Salix_purpurea | 189 | 0 | 189 | 651 | 29.0 | Purple willow | Plants |
| Salpingoeca_rosetta | 10 | 0 | 10 | 188 | 5.3 | Choanoflagellate | Protists |
| Saprolegnia_parasitica | 8 | 0 | 8 | 197 | 4.1 | Water mold | Protists |
| Sarcophilus_harrisii | 177 | 0 | 177 | 365 | 48.5 | Tasmanian devil | Metazoa |
| Scedosporium_apiospermum | 12 | 0 | 12 | 93 | 12.9 | Fungus found in stagnant water that infects immunocompromised humans | Fungi |
| Scheffersomyces_stipitis | 8 | 0 | 8 | 83 | 9.6 | Yeast researched for its potential in renewable fuels | Fungi |
| Schistocephalus_solidus | 26 | 0 | 26 | 138 | 18.8 | Tapeworm of fish | Metazoa |
| Schistosoma_curassoni | 35 | 0 | 35 | 236 | 14.8 | Trematode - parasite of sheep, cattle and goats | Metazoa |
| Schistosoma_haematobium | 40 | 0 | 40 | 202 | 19.8 | Digenetic trematode, found in Africa and the Middle East | Metazoa |
| Schistosoma_japonicum | 48 | 0 | 48 | 213 | 22.5 | Blood fluke | Metazoa |
| Schistosoma_margrebowiei | 23 | 0 | 23 | 208 | 11.1 | Basal member of Schistosoma blood flukes | Metazoa |
| Schistosoma_mattheei | 31 | 0 | 31 | 185 | 16.8 | Blood fluke - livestock parasite | Metazoa |
| Schistosoma_rodhaini | 25 | 0 | 25 | 207 | 12.1 | Blood fluke - parasite of wild rodents | Metazoa |
| Schizosaccharomyces_cryophilus | 15 | 0 | 15 | 111 | 13.5 | Fission yeast | Fungi |
| Schizosaccharomyces_japonicus | 17 | 0 | 17 | 122 | 13.9 | Fission yeast | Fungi |
| Schizosaccharomyces_octosporus | 15 | 0 | 15 | 107 | 14.0 | Fission yeast | Fungi |
| Scleroderma_citrinum | 20 | 0 | 20 | 251 | 8.0 | Pigskin poison puffball | Fungi |
| Sclerotinia_borealis | 16 | 0 | 16 | 121 | 13.2 | Pathogen infecting barley, rye and wheat | Fungi |
| Sclerotinia_sclerotiorum | 11 | 0 | 11 | 91 | 12.1 | Pathogenic fungus, causes fuzzy growths on plants | Fungi |
| Selaginella_moellendorffii | 96 | 0 | 96 | 502 | 19.1 | Ancient vascular plant | Plants |
| Serendipita_vermifera | 11 | 0 | 11 | 160 | 6.9 | Jelly fungus | Fungi |
| Serpula_lacrymans | 14 | 0 | 14 | 293 | 4.8 | Fungus (cause of dry rot) | Fungi |
| Setaria_italica | 93 | 0 | 93 | 486 | 19.1 | Foxtail millet | Plants |
| Setosphaeria_turcica | 13 | 0 | 13 | 122 | 10.7 | Causal agent of Northern Leaf Blight in corn | Fungi |
| Soboliphyme_baturini | 39 | 0 | 39 | 155 | 25.2 | Parasitic nematode | Metazoa |
| Solanum_lycopersicum | 110 | 0 | 110 | 505 | 21.8 | Tomato | Plants |
| Solanum_tuberosum | 111 | 0 | 111 | 533 | 20.8 | Potato | Plants |
| Solenopsis_invicta | 50 | 0 | 50 | 189 | 26.5 | Fire ant | Metazoa |
| Sordaria_macrospora | 18 | 0 | 18 | 119 | 15.1 | Microscopic fungus - model of fruiting body development in Ascomycetes | Fungi |
| Sorex_araneus | 137 | 0 | 137 | 260 | 52.7 | Eurasian common shrew | Metazoa |
| Sorghum_bicolor | 90 | 0 | 90 | 565 | 15.9 | Sorghum (drought-tolerant African grass) | Plants |
| Spathaspora_passalidarum | 9 | 0 | 9 | 91 | 9.9 | Yeast with potential in biofuel production | Fungi |
| Sphaerobolus_stellatus | 9 | 0 | 9 | 238 | 3.8 | Cannonball fungus | Fungi |
| Sphaerulina_musiva | 14 | 0 | 14 | 109 | 12.8 | Cause of leaf spot and canker disease on poplar trees | Fungi |
| Spirometra_erinaceieuropaei | 26 | 0 | 26 | 245 | 10.6 | Tapeworm that infects domestic animals and humans | Metazoa |
| Spizellomyces_punctatus | 17 | 0 | 17 | 159 | 10.7 | Fungus with weird mitochondrial genome | Fungi |
| Sporisorium_reilianum | 15 | 0 | 15 | 117 | 12.8 | Causal agent of maize head smut | Fungi |
| Sporobolomyces_roseus | 8 | 0 | 8 | 96 | 8.3 | Red yeast, related to rusts and smuts | Fungi |
| Sporothrix_brasiliensis | 17 | 0 | 17 | 101 | 16.8 | Soil-dwelling fungus - possible causitive agent of sporotrichosis | Fungi |
| Sporothrix_schenckii | 16 | 0 | 16 | 103 | 15.5 | Soil-dwelling fungus - causative agent of rose handler_s disease | Fungi |
| Stachybotrys_chartarum | 15 | 0 | 15 | 105 | 14.3 | Black mold that causes poor indoor air quality | Fungi |
| Stachybotrys_chlorohalonata | 16 | 0 | 16 | 106 | 15.1 | Black mold that causes poor indoor air quality | Fungi |
| Stagonospora_nodorum | 13 | 0 | 13 | 120 | 10.8 | Septoria nodorum, pathogen of wheat and related cereals, cause of glume blotch | Fungi |
| Steinernema_carpocapsae | 49 | 0 | 49 | 269 | 18.2 | Nematode - usefule in gardening | Metazoa |
| Steinernema_feltiae | 43 | 0 | 43 | 271 | 15.9 | Predatory nematode | Metazoa |
| Steinernema_glaseri | 51 | 0 | 51 | 293 | 17.4 | Predatory nematode | Metazoa |
| Steinernema_monticolum | 42 | 0 | 42 | 293 | 14.3 | Nematode common in Korea | Metazoa |
| Steinernema_scapterisci | 45 | 0 | 45 | 274 | 16.4 | Mole cricket nematode | Metazoa |
| Strigamia_maritima | 76 | 0 | 76 | 390 | 19.5 | Centipede | Metazoa |
| Strongylocentrotus_purpuratus | 60 | 0 | 60 | 392 | 15.3 | Sea urchin | Metazoa |
| Strongyloides_papillosus | 38 | 0 | 38 | 311 | 12.2 | Intestinal threadworm | Metazoa |
| Strongyloides_stercoralis | 36 | 0 | 36 | 186 | 19.4 | Threadworm - human pathogenic parasitic roundworm causing the disease strongyloidiasis | Metazoa |
| Strongyloides_venezuelensis | 33 | 0 | 33 | 235 | 14.0 | Threadworm - infects mice | Metazoa |
| Strongylus_vulgaris | 25 | 0 | 25 | 139 | 18.0 | Blood worm - common horse parasite | Metazoa |
| Suillus_luteus | 16 | 0 | 16 | 153 | 10.5 | Slippery Jack mushroom | Fungi |
| Sus_scrofa | 202 | 0 | 202 | 390 | 51.8 | Pig | Metazoa |
| Syphacia_muris | 45 | 0 | 45 | 164 | 27.4 | Rat pinworm | Metazoa |
| Taenia_asiatica | 27 | 0 | 27 | 172 | 15.7 | Asian tapeworm | Metazoa |
| Taenia_solium | 34 | 0 | 34 | 216 | 15.7 | Pork tapeworm | Metazoa |
| Taeniopygia_guttata | 158 | 0 | 158 | 315 | 50.2 | Zebra finch | Metazoa |
| Takifugu_rubripes | 199 | 0 | 199 | 399 | 49.9 | Pufferfish | Metazoa |
| Talaromyces_marneffei | 15 | 0 | 15 | 125 | 12.0 | Infects humans and causes fever, weight loss and malaise | Fungi |
| Talaromyces_stipitatus | 15 | 0 | 15 | 132 | 11.4 | Non-pathogenic filamentous fungus | Fungi |
| Tarsius_syrichta | 124 | 0 | 124 | 267 | 46.4 | Philippine tarsier | Metazoa |
| Teladorsagia_circumcincta | 54 | 0 | 54 | 241 | 22.4 | Parasitic nematode that infects sheep and goats | Metazoa |
| Tetrahymena_thermophila | 7 | 0 | 7 | 222 | 3.2 | Ciliate | Protists |
| Tetranychus_urticae | 52 | 0 | 52 | 192 | 27.1 | Two-spotted spider mite | Metazoa |
| Tetrapisispora_blattae | 12 | 0 | 12 | 87 | 13.8 | Tetrapisispora blattae | Fungi |
| Tetrapisispora_phaffii | 13 | 0 | 13 | 93 | 14.0 | Tetrapisispora phaffii | Fungi |
| Thecamonas_trahens | 3 | 0 | 3 | 128 | 2.3 | Gliding zooflagellate | Protists |
| Theileria_annulata | 7 | 0 | 7 | 89 | 7.9 | Cattle Parasite | Protists |
| Theileria_parva | 8 | 0 | 8 | 86 | 9.3 | Cattle Parasite | Protists |
| Thelazia_callipaeda | 37 | 0 | 37 | 157 | 23.6 | Parasitic nematode - the most common cause of thelaziasis | Metazoa |
| Theobroma_cacao | 93 | 0 | 93 | 508 | 18.3 | Cocoa tree | Plants |
| Thielavia_terrestris | 16 | 0 | 16 | 116 | 13.8 | Thermophilic fungus related to Nerospora | Fungi |
| Tilletiaria_anomala | 13 | 0 | 13 | 107 | 12.1 | Fungus found in decayed wood | Fungi |
| Togninia_minima | 16 | 0 | 16 | 104 | 15.4 | Togninia minima | Fungi |
| Torrubiella_hemipterigena | 18 | 0 | 18 | 113 | 15.9 | Fungus that lives on insects | Fungi |
| Torulaspora_delbrueckii | 13 | 0 | 13 | 84 | 15.5 | Ubiquitous yeast species | Fungi |
| Toxocara_canis | 37 | 0 | 37 | 188 | 19.7 | Dog roundworm | Metazoa |
| Toxoplasma_gondii | 9 | 0 | 9 | 145 | 6.2 | Toxoplasma gondii | Protists |
| Trametes_cinnabarina | 15 | 0 | 15 | 153 | 9.8 | White-rot fungus | Fungi |
| Tremella_mesenterica | 9 | 0 | 9 | 218 | 4.1 | Golden jelly fungus | Fungi |
| Tribolium_castaneum | 62 | 0 | 62 | 305 | 20.3 | Beetle | Metazoa |
| Trichinella_nativa | 39 | 0 | 39 | 198 | 19.7 | Nematode worm found in arctic and subarctic regions | Metazoa |
| Trichinella_spiralis | 38 | 0 | 38 | 276 | 13.8 | Trichina worm - cause of trichinosis | Metazoa |
| Trichobilharzia_regenti | 30 | 0 | 30 | 190 | 15.8 | Nasal parasite of birds that causes cercarial dermatitis in humans | Metazoa |
| Trichoderma_atroviride | 17 | 0 | 17 | 114 | 14.9 | Cold tollerant, hyperparasite | Fungi |
| Trichoderma_reesei | 17 | 0 | 17 | 102 | 16.7 | Hypocrea jecorina | Fungi |
| Trichoderma_virens | 17 | 0 | 17 | 109 | 15.6 | Plant beneficial fungus | Fungi |
| Trichophyton_equinum | 13 | 0 | 13 | 103 | 12.6 | Horse ringworm | Fungi |
| Trichophyton_interdigitale | 15 | 0 | 15 | 112 | 13.4 | Source of penicillin | Fungi |
| Trichophyton_rubrum | 14 | 0 | 14 | 108 | 13.0 | Athletes foot, jock itch, ringworm | Fungi |
| Trichophyton_soudanense | 14 | 0 | 14 | 108 | 13.0 | Common cause of tinea capitis | Fungi |
| Trichophyton_tonsurans | 13 | 0 | 13 | 101 | 12.9 | Cause of Tinea capitis (scalp ringworm) | Fungi |
| Trichophyton_verrucosum | 11 | 0 | 11 | 93 | 11.8 | Cow ringworm | Fungi |
| Trichoplax_adhaerens | 37 | 0 | 37 | 173 | 21.4 | Placozoan (simple animal) | Metazoa |
| Trichosporon_asahii | 8 | 0 | 8 | 98 | 8.2 | Fungal pathogen found in immunologically compromised patients | Fungi |
| Trichuris_muris | 38 | 0 | 38 | 244 | 15.6 | Nematode parasite of mice | Metazoa |
| Trichuris_suis | 35 | 0 | 35 | 214 | 16.4 | Whipworm | Metazoa |
| Trichuris_trichiura | 26 | 0 | 26 | 166 | 15.7 | Round worm that causes trichuriasis | Metazoa |
| Triticum_aestivum | 258 | 0 | 258 | 1298 | 19.9 | Bread wheat | Plants |
| Triticum_urartu | 75 | 0 | 75 | 425 | 17.6 | Red wild einkorn | Plants |
| Trypanosoma_congolense | 30 | 0 | 30 | 166 | 18.1 | Protist (animal parasite) | Protists |
| Trypanosoma_cruzi | 27 | 0 | 27 | 137 | 19.7 | Trypanosoma cruzi | Protists |
| Trypanosoma_vivax | 23 | 0 | 23 | 144 | 16.0 | Protist (animal parasite) | Protists |
| Tuber_melanosporum | 13 | 0 | 13 | 109 | 11.9 | Black truffle | Fungi |
| Tulasnella_calospora | 14 | 0 | 14 | 141 | 9.9 | Tulasnella calospora | Fungi |
| Tupaia_belangeri | 139 | 0 | 139 | 284 | 48.9 | Northern treeshrew | Metazoa |
| Tursiops_truncatus | 172 | 0 | 172 | 338 | 50.9 | Atlantic bottle-nosed dolphin | Metazoa |
| Tyto_alba | 105 | 0 | 105 | 236 | 44.5 | Barn owl | Metazoa |
| Uncinocarpus_reesii | 18 | 0 | 18 | 100 | 18.0 | Related to Coccidioides, the cause of Coccidiomycosis | Fungi |
| Ustilaginoidea_virens | 15 | 0 | 15 | 98 | 15.3 | Plant pathogen that causes False Smut of rice | Fungi |
| Ustilago_hordei | 13 | 0 | 13 | 144 | 9.0 | Cause of covered smut of barley | Fungi |
| Ustilago_maydis | 15 | 0 | 15 | 108 | 13.9 | Corn smut | Fungi |
| Vanderwaltozyma_polyspora | 12 | 0 | 12 | 95 | 12.6 | Yeast: post-WGD lineage most divergent from cerevisiae | Fungi |
| Verruconis_gallopava | 13 | 0 | 13 | 112 | 11.6 | Mold causing saprophytic infection in immunosuppressed hosts | Fungi |
| Verticillium_albo_atrum | 14 | 0 | 14 | 93 | 15.1 | Plant pathogen targeting: hops, alfalfa, cotton | Fungi |
| Verticillium_alfalfae | 14 | 0 | 14 | 93 | 15.1 | Causes verticillium wilt in some plant species | Fungi |
| Verticillium_dahliae | 16 | 0 | 16 | 104 | 15.4 | Causes verticillium wilt | Fungi |
| Vicugna_pacos | 124 | 0 | 124 | 243 | 51.0 | Alpaca | Metazoa |
| Vitis_vinifera | 106 | 0 | 106 | 443 | 23.9 | Common Grape Vine | Plants |
| Vittaforma_corneae | 1 | 0 | 1 | 28 | 3.6 | Human-infecting microsporidian | Fungi |
| Volvox_carteri | 14 | 0 | 14 | 186 | 7.5 | Volvox | Alga |
| Wallemia_ichthyophaga | 10 | 0 | 10 | 104 | 9.6 | Most halophilic fungus known | Fungi |
| Wallemia_sebi | 13 | 0 | 13 | 104 | 12.5 | Brown mold commonly found in indoor air dust | Fungi |
| Wickerhamomyces_ciferrii | 12 | 0 | 12 | 100 | 12.0 | Yeast | Fungi |
| Wuchereria_bancrofti | 51 | 0 | 51 | 241 | 21.2 | W. bancrofti (nematode) | Metazoa |
| Xiphophorus_maculatus | 203 | 0 | 203 | 416 | 48.8 | Platyfish | Metazoa |
| Yarrowia_lipolytica | 9 | 0 | 9 | 103 | 8.7 | Yeast | Fungi |
| Zea_mays | 157 | 0 | 157 | 643 | 24.4 | Maize | Plants |
| Zootermopsis_nevadensis | 63 | 0 | 63 | 217 | 29.0 | Dampwood termite | Metazoa |
| Zygosaccharomyces_bailii | 22 | 0 | 22 | 160 | 13.8 | Causes spoilage resulting in huge economic losses to the food industry | Fungi |
| Zygosaccharomyces_rouxii | 11 | 0 | 11 | 82 | 13.4 | Z. rouxii | Fungi |
| Zymoseptoria_tritici | 16 | 0 | 16 | 101 | 15.8 | Cause of septoria tritici blotch in wheat | Fungi |