CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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Family Name
Num Motifs
Total Direct
Total Inferred
Total RBPs
Pct RBPs
PFam ID
RRM
26378
358
26020
76904
34.3
RRMs_3D
CCHC ZF
82
1
81
14867
0.6
zf-CCHC
CCCH ZF
1137
25
1112
12821
8.9
zf-CCCH
KH
3914
55
3859
10917
35.9
KH_1
NHL
324
8
316
6708
4.8
NHL
RanBP ZF
79
1
78
4664
1.7
zf-RanBP
S1
586
1
585
4266
13.7
S1
PUF
261
11
250
3695
7.1
PUF
zf-CCCH,RRMs_3D
103
1
102
2190
4.7
zf-CCCH,RRMs_3D
YTH
81
1
80
1695
4.8
YTH
CSD
474
5
469
1530
31.0
CSD
zf-CCHC,RRMs_3D
395
7
388
1469
26.9
zf-CCHC,RRMs_3D
La
68
1
67
1468
4.6
La
La,RRMs_3D
0
0
0
1385
0.0
La,RRMs_3D
zf-RanBP,RRMs_3D
231
6
225
1136
20.3
zf-RanBP,RRMs_3D
zf-CCHC,KH_1
93
3
90
443
21.0
zf-CCHC,KH_1
zf-CCHC,CSD
124
1
123
376
33.0
zf-CCHC,CSD
CCHH ZF
0
0
0
362
0.0
zf-CCHH
KH_1,RRMs_3D
251
4
247
307
81.8
KH_1,RRMs_3D
zf-CCCH,zf-CCHC
0
0
0
294
0.0
zf-CCCH,zf-CCHC
PUF,RRMs_3D
0
0
0
277
0.0
PUF,RRMs_3D
KH_1,S1
0
0
0
252
0.0
KH_1,S1
zf-CCCH,KH_1
0
0
0
205
0.0
zf-CCCH,KH_1
RRMs_3D,YTH
0
0
0
198
0.0
RRMs_3D,YTH
KH_1,SAM_1
0
0
0
196
0.0
KH_1,SAM_1
SAM
151
2
149
151
100.0
SAM_1
zf-CCCH,YTH
0
0
0
72
0.0
zf-CCCH,YTH
zf-CCHC,KH_1,RRMs_3D
0
0
0
70
0.0
zf-CCHC,KH_1,RRMs_3D
zf-CCHC,S1
0
0
0
65
0.0
zf-CCHC,S1
zf-CCHC,SAM_1
0
0
0
63
0.0
zf-CCHC,SAM_1
zf-CCCH,PUF
0
0
0
26
0.0
zf-CCCH,PUF
zf-C2H2,RRMs_3D
1
0
1
19
5.3
zf-C2H2,RRMs_3D
zf-C2H2,zf-CCCH
0
0
0
19
0.0
zf-C2H2,zf-CCCH
zf-C2H2,zf-CCHC
0
0
0
13
0.0
zf-C2H2,zf-CCHC
Unknown
11
11
0
11
100.0
UNKNOWN
RRMs_3D,SAM_1
0
0
0
11
0.0
RRMs_3D,SAM_1
CSD,RRMs_3D
0
0
0
8
0.0
CSD,RRMs_3D
zf-CCCH,CSD
0
0
0
6
0.0
zf-CCCH,CSD
La,SAM_1
0
0
0
5
0.0
La,SAM_1
zf-CCCH,zf-RanBP
0
0
0
5
0.0
zf-CCCH,zf-RanBP
zf-C2H2,NHL
0
0
0
4
0.0
zf-C2H2,NHL
KH_1,zf-RanBP
0
0
0
3
0.0
KH_1,zf-RanBP
zf-C2H2,zf-RanBP
0
0
0
3
0.0
zf-C2H2,zf-RanBP
zf-CCCH,KH_1,YTH
0
0
0
3
0.0
zf-CCCH,KH_1,YTH
zf-CCHC,zf-RanBP
0
0
0
3
0.0
zf-CCHC,zf-RanBP
zf-RanBP,SAM_1
0
0
0
3
0.0
zf-RanBP,SAM_1
C2H2 ZF
2
2
0
2
100.0
zf-C2H2
zf-RanBP,S1
0
0
0
2
0.0
zf-RanBP,S1
zf-CCHC,KH_1,zf-RanBP
0
0
0
2
0.0
zf-CCHC,KH_1,zf-RanBP
zf-CCCH,zf-RanBP,RRMs_3D
0
0
0
2
0.0
zf-CCCH,zf-RanBP,RRMs_3D
zf-CCCH,SAM_1
0
0
0
2
0.0
zf-CCCH,SAM_1
zf-CCCH,S1
0
0
0
2
0.0
zf-CCCH,S1
zf-C2H2,SAM_1
0
0
0
2
0.0
zf-C2H2,SAM_1
zf-C2H2,KH_1
0
0
0
2
0.0
zf-C2H2,KH_1
KH_1,zf-RanBP,RRMs_3D
0
0
0
2
0.0
KH_1,zf-RanBP,RRMs_3D
CSD,SAM_1
0
0
0
2
0.0
CSD,SAM_1
zf-C2H2,zf-CCCH,KH_1
0
0
0
1
0.0
zf-C2H2,zf-CCCH,KH_1
NHL,RRMs_3D
0
0
0
1
0.0
NHL,RRMs_3D
zf-C2H2,zf-CCCH,RRMs_3D
0
0
0
1
0.0
zf-C2H2,zf-CCCH,RRMs_3D
zf-C2H2,zf-RanBP,RRMs_3D
0
0
0
1
0.0
zf-C2H2,zf-RanBP,RRMs_3D
zf-CCCH,CSD,RRMs_3D
0
0
0
1
0.0
zf-CCCH,CSD,RRMs_3D
zf-CCCH,KH_1,RRMs_3D
0
0
0
1
0.0
zf-CCCH,KH_1,RRMs_3D
zf-CCCH,zf-CCHC,KH_1,RRMs_3D
0
0
0
1
0.0
zf-CCCH,zf-CCHC,KH_1,RRMs_3D
CSD,zf-RanBP
0
0
0
1
0.0
CSD,zf-RanBP
KH_1,NHL
0
0
0
1
0.0
KH_1,NHL
zf-CCCH,zf-CCHC,RRMs_3D
0
0
0
1
0.0
zf-CCCH,zf-CCHC,RRMs_3D
zf-CCCH,zf-CCHC,zf-RanBP
0
0
0
1
0.0
zf-CCCH,zf-CCHC,zf-RanBP