CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
Home
Tools
Download cart
Bulk downloads
Database stats
Contact us
Help
How to cite
Family Name
Num Motifs
Total Direct
Total Inferred
Total RBPs
Pct RBPs
PFam ID
RRM
26378
358
26020
76904
34.3
RRMs_3D
KH
3914
55
3859
10917
35.9
KH_1
CCCH ZF
1137
25
1112
12821
8.9
zf-CCCH
Unknown
11
11
0
11
100.0
UNKNOWN
PUF
261
11
250
3695
7.1
PUF
NHL
324
8
316
6708
4.8
NHL
zf-CCHC,RRMs_3D
395
7
388
1469
26.9
zf-CCHC,RRMs_3D
zf-RanBP,RRMs_3D
231
6
225
1136
20.3
zf-RanBP,RRMs_3D
CSD
474
5
469
1530
31.0
CSD
KH_1,RRMs_3D
251
4
247
307
81.8
KH_1,RRMs_3D
zf-CCHC,KH_1
93
3
90
443
21.0
zf-CCHC,KH_1
SAM
151
2
149
151
100.0
SAM_1
C2H2 ZF
2
2
0
2
100.0
zf-C2H2
S1
586
1
585
4266
13.7
S1
RanBP ZF
79
1
78
4664
1.7
zf-RanBP
zf-CCHC,CSD
124
1
123
376
33.0
zf-CCHC,CSD
zf-CCCH,RRMs_3D
103
1
102
2190
4.7
zf-CCCH,RRMs_3D
YTH
81
1
80
1695
4.8
YTH
CCHC ZF
82
1
81
14867
0.6
zf-CCHC
La
68
1
67
1468
4.6
La
zf-C2H2,zf-RanBP
0
0
0
3
0.0
zf-C2H2,zf-RanBP
KH_1,zf-RanBP
0
0
0
3
0.0
KH_1,zf-RanBP
zf-CCCH,KH_1,YTH
0
0
0
3
0.0
zf-CCCH,KH_1,YTH
zf-CCHC,zf-RanBP
0
0
0
3
0.0
zf-CCHC,zf-RanBP
zf-RanBP,SAM_1
0
0
0
3
0.0
zf-RanBP,SAM_1
zf-CCCH,KH_1,RRMs_3D
0
0
0
1
0.0
zf-CCCH,KH_1,RRMs_3D
zf-CCCH,CSD,RRMs_3D
0
0
0
1
0.0
zf-CCCH,CSD,RRMs_3D
zf-C2H2,NHL
0
0
0
4
0.0
zf-C2H2,NHL
zf-C2H2,zf-RanBP,RRMs_3D
0
0
0
1
0.0
zf-C2H2,zf-RanBP,RRMs_3D
La,SAM_1
0
0
0
5
0.0
La,SAM_1
zf-CCCH,zf-RanBP
0
0
0
5
0.0
zf-CCCH,zf-RanBP
zf-CCCH,CSD
0
0
0
6
0.0
zf-CCCH,CSD
zf-CCHC,SAM_1
0
0
0
63
0.0
zf-CCHC,SAM_1
zf-CCHC,S1
0
0
0
65
0.0
zf-CCHC,S1
zf-CCHC,KH_1,RRMs_3D
0
0
0
70
0.0
zf-CCHC,KH_1,RRMs_3D
zf-CCCH,YTH
0
0
0
72
0.0
zf-CCCH,YTH
CSD,RRMs_3D
0
0
0
8
0.0
CSD,RRMs_3D
zf-C2H2,zf-CCCH,RRMs_3D
0
0
0
1
0.0
zf-C2H2,zf-CCCH,RRMs_3D
zf-C2H2,zf-CCCH,KH_1
0
0
0
1
0.0
zf-C2H2,zf-CCCH,KH_1
NHL,RRMs_3D
0
0
0
1
0.0
NHL,RRMs_3D
KH_1,NHL
0
0
0
1
0.0
KH_1,NHL
CSD,zf-RanBP
0
0
0
1
0.0
CSD,zf-RanBP
CCHH ZF
0
0
0
362
0.0
zf-CCHH
zf-C2H2,SAM_1
0
0
0
2
0.0
zf-C2H2,SAM_1
zf-CCCH,zf-CCHC,zf-RanBP
0
0
0
1
0.0
zf-CCCH,zf-CCHC,zf-RanBP
zf-C2H2,zf-CCHC
0
0
0
13
0.0
zf-C2H2,zf-CCHC
La,RRMs_3D
0
0
0
1385
0.0
La,RRMs_3D
zf-CCCH,zf-CCHC,RRMs_3D
0
0
0
1
0.0
zf-CCCH,zf-CCHC,RRMs_3D
zf-C2H2,zf-CCCH
0
0
0
19
0.0
zf-C2H2,zf-CCCH
zf-C2H2,RRMs_3D
1
0
1
19
5.3
zf-C2H2,RRMs_3D
KH_1,SAM_1
0
0
0
196
0.0
KH_1,SAM_1
RRMs_3D,YTH
0
0
0
198
0.0
RRMs_3D,YTH
CSD,SAM_1
0
0
0
2
0.0
CSD,SAM_1
KH_1,zf-RanBP,RRMs_3D
0
0
0
2
0.0
KH_1,zf-RanBP,RRMs_3D
zf-C2H2,KH_1
0
0
0
2
0.0
zf-C2H2,KH_1
RRMs_3D,SAM_1
0
0
0
11
0.0
RRMs_3D,SAM_1
zf-CCCH,S1
0
0
0
2
0.0
zf-CCCH,S1
zf-CCCH,SAM_1
0
0
0
2
0.0
zf-CCCH,SAM_1
zf-CCCH,zf-RanBP,RRMs_3D
0
0
0
2
0.0
zf-CCCH,zf-RanBP,RRMs_3D
zf-CCHC,KH_1,zf-RanBP
0
0
0
2
0.0
zf-CCHC,KH_1,zf-RanBP
zf-RanBP,S1
0
0
0
2
0.0
zf-RanBP,S1
zf-CCCH,KH_1
0
0
0
205
0.0
zf-CCCH,KH_1
zf-CCCH,zf-CCHC,KH_1,RRMs_3D
0
0
0
1
0.0
zf-CCCH,zf-CCHC,KH_1,RRMs_3D
KH_1,S1
0
0
0
252
0.0
KH_1,S1
zf-CCCH,PUF
0
0
0
26
0.0
zf-CCCH,PUF
PUF,RRMs_3D
0
0
0
277
0.0
PUF,RRMs_3D
zf-CCCH,zf-CCHC
0
0
0
294
0.0
zf-CCCH,zf-CCHC