CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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ENSTSYG00000007423
(
Tarsius syrichta
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRMs_3D)
IPR000504
ENSTSYG00000007423
T088662_2.00
Ensembl (2018-Dec-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
JPLE
e-dist
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
Motifs from training set RBPs that strongly contributed to the reconstructed motif
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
e-dist (%
contribution)
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSTSYP00000006806
RRM
71
120
TQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLXXXX
RNA contacting residues
no predictions available
Links
Other
RRM
family RBPs
Other
Tarsius syrichta
RBPs
2 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
NONO
Ochotona princeps
ENSOPRG00000001139
N
0.885
PSPC1
Procavia capensis
ENSPCAG00000008314
N
0.740