YTHDC1 (Homo sapiens)
YTH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF04146 (YTH) IPR007275 ENSG00000083896 T147798_2.00 Ensembl (2018-Dec-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID JPLE
e-dist
YTHDC1
M00552_2.00		 Homo sapiens KVVURC SELEX
Cook et al.(2011)
969_20167602 		(Direct)

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

Motifs from training set RBPs that strongly contributed to the reconstructed motif

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID e-dist (%
contribution)

RNA Binding Domains

Protein ID Domain From To Sequence
ENSP00000339245 YTH 355 493
ENSP00000347888 YTH 337 475
ENSP00000463982 YTH 355 493

RNA contacting residues

no predictions available

Links

Other YTH family RBPs
Other Homo sapiens RBPs

81 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ENSG00000275272 Homo sapiens ENSG00000275272 I 1.000
YTHDC1 Gorilla gorilla ENSGGOG00000021958 I 1.000
YTHDC1 Macaca mulatta ENSMMUG00000002265 I 1.000
Ythdc1 Mus musculus ENSMUSG00000035851 I 1.000
ENSPANG00000021590 Papio anubis ENSPANG00000021590 I 1.000
ENSPPYG00000014726 Pongo abelii ENSPPYG00000014726 I 1.000
YTHDC1 Pan troglodytes ENSPTRG00000016105 I 1.000
Ythdc1 Rattus norvegicus ENSRNOG00000001996 I 1.000
YTHDC1 Sorex araneus ENSSARG00000010960 I 1.000
ENSSTOG00000013652 Ictidomys tridecemlineatus ENSSTOG00000013652 I 1.000
YTHDC1 Tupaia belangeri ENSTBEG00000011546 I 1.000
YTHDC1 Vicugna pacos ENSVPAG00000009040 I 1.000
ENSP00000339245 Macaca fascicularis ENSP00000339245 I 1.000
YTHDC1 Cavia porcellus ENSCPOG00000010929 I 1.000
ENSCSAG00000005252 Chlorocebus sabaeus ENSCSAG00000005252 I 1.000
Ythdc1 Dipodomys ordii ENSDORG00000013045 I 1.000
YTHDC1 Erinaceus europaeus ENSEEUG00000015466 I 1.000
ENSNLEG00000009202 Nomascus leucogenys ENSNLEG00000009202 I 0.993
ENSOARG00000008633 Ovis aries ENSOARG00000008633 I 0.993
ENSP00000339245-D1 Bos grunniens ENSP00000339245-D1 I 0.993
YTHDC1 Bos taurus ENSBTAG00000015572 I 0.993
YTHDC1 Callithrix jacchus ENSCJAG00000009934 I 0.993
YTHDC1 Dasypus novemcinctus ENSDNOG00000004949 I 0.993
YTHDC1 Loxodonta africana ENSLAFG00000021592 I 0.986
ENSMODG00000020754 Monodelphis domestica ENSMODG00000020754 I 0.986
ENSMPUG00000001743 Mustela putorius furo ENSMPUG00000001743 I 0.986
YTHDC1 Ornithorhynchus anatinus ENSOANG00000014398 I 0.986
YTHDC1 Oryctolagus cuniculus ENSOCUG00000015886 I 0.986
YTHDC1 Otolemur garnettii ENSOGAG00000003362 I 0.986
ENSSHAG00000002538 Sarcophilus harrisii ENSSHAG00000002538 I 0.986
ENSAMEG00000005688 Ailuropoda melanoleuca ENSAMEG00000005688 I 0.986
YTHDC1 Canis familiaris ENSCAFG00000002821 I 0.986
YTHDC1 Equus caballus ENSECAG00000018303 I 0.986
YTHDC1 Felis catus ENSFCAG00000026791 I 0.986
ENSGALG00000011795 Gallus gallus ENSGALG00000011795 I 0.978
YTHDC1 Meleagris gallopavo ENSMGAG00000010391 I 0.978
YTHDC1 Myotis lucifugus ENSMLUG00000016300 I 0.978
ENSPSIG00000002782 Pelodiscus sinensis ENSPSIG00000002782 I 0.978
ENSTGUG00000004452 Taeniopygia guttata ENSTGUG00000004452 I 0.978
Aan_R005194 Calypte anna Aan_R005194 I 0.978
Afo_R015714 Aptenodytes forsteri Afo_R015714 I 0.978
Brh_R011727 Buceros rhinoceros Brh_R011727 I 0.978
Cmyd_10005549 Chelonia mydas Cmyd_10005549 I 0.978
Gfo_R000940 Geospiza fortis Gfo_R000940 I 0.978
Myotis_brandtii_YTHDC1_10028100 Myotis brandtii Myotis_brandtii_YTHDC1_10028100 I 0.978
Ogr10235 Ophisaurus gracilis Ogr10235 I 0.978
Pvit_10636 Pogona vitticeps Pvit_10636 I 0.978
Tal_R004355 Tyto alba Tal_R004355 I 0.978
ENSAPLG00000009921 Anas platyrhynchos ENSAPLG00000009921 I 0.978
ENSFALG00000006581 Ficedula albicollis ENSFALG00000006581 I 0.978
ENSTSYG00000011668 Tarsius syrichta ENSTSYG00000011668 I 0.964
ENSLACG00000004893 Latimeria chalumnae ENSLACG00000004893 I 0.957
ENSLOCG00000003045 Lepisosteus oculatus ENSLOCG00000003045 I 0.957
YTHDC1 Tursiops truncatus ENSTTRG00000005083 I 0.957
YTHDC1 Anolis carolinensis ENSACAG00000009697 I 0.957
ythdc1 Xenopus tropicalis XB-GENE-1004178 I 0.950
ENSAMXG00000006978 Astyanax mexicanus ENSAMXG00000006978 I 0.942
ythdc1.L Xenopus laevis XB-GENE-1004184 I 0.935
ythdc1 Danio rerio ENSDARG00000051953 I 0.935
ythdc1 Takifugu rubripes ENSTRUG00000010142 I 0.914
ythdc1 Gasterosteus aculeatus ENSGACG00000015486 I 0.906
YTHDC1 Pteropus vampyrus ENSPVAG00000015551 I 0.906
ENSONIG00000012651 Oreochromis niloticus ENSONIG00000012651 I 0.899
ythdc1 Tetraodon nigroviridis ENSTNIG00000013243 I 0.899
ENSGMOG00000018815 Gadus morhua ENSGMOG00000018815 I 0.885
ENSPFOG00000013404 Poecilia formosa ENSPFOG00000013404 I 0.878
ENSXMAG00000005221 Xiphophorus maculatus ENSXMAG00000005221 I 0.878
ENSMODG00000014337 Monodelphis domestica ENSMODG00000014337 I 0.842
YTHDC1 Ochotona princeps ENSOPRG00000008986 I 0.842
ENSMODG00000010076 Monodelphis domestica ENSMODG00000010076 I 0.799
ENSMODG00000009173 Monodelphis domestica ENSMODG00000009173 I 0.791
ENSMODG00000004117 Monodelphis domestica ENSMODG00000004117 I 0.763
Alligator_sinensis_CCG010613.3 Alligator sinensis Alligator_sinensis_CCG010613.3 I 0.740
Ocbimv22002509m.g Octopus bimaculoides Ocbimv22002509m.g I 0.727
GB54291 Apis mellifera GB54291 I 0.712
L798_00500 Zootermopsis nevadensis L798_00500 I 0.705
L798_11641 Zootermopsis nevadensis L798_11641 I 0.705
NV10103 Nasonia vitripennis NV10103 I 0.705
PHUM305930 Pediculus humanus PHUM305930 I 0.705
Hsal_11498--XP_395221.3_APIME Harpegnathos saltator Hsal_11498--XP_395221.3_APIME I 0.705