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RNA Scan
Scan an RNA sequence for potential binding sites Click for sample	Please use a FASTA format submission (max 8000 bp)	Species Acanthocheilonema_viteae Acremonium_chrysogenum Acyrthosiphon_pisum Aedes_aegypti Aegilops_tauschii Agaricus_bisporus Ailuropoda_melanoleuca Albugo_laibachii Alligator_sinensis Allomyces_macrogynus Alternaria_brassicicola Amanita_muscaria Amborella_trichopoda Amphimedon_queenslandica Anas_platyrhynchos Ancylostoma_caninum Ancylostoma_ceylanicum Ancylostoma_duodenale Angiostrongylus_cantonensis Angiostrongylus_costaricensis Anisakis_simplex Anncaliia_algerae Anolis_carolinensis Anopheles_albimanus Anopheles_arabiensis Anopheles_atroparvus Anopheles_christyi Anopheles_coluzzii Anopheles_culicifacies Anopheles_darlingi Anopheles_dirus Anopheles_epiroticus Anopheles_farauti Anopheles_funestus Anopheles_gambiae Anopheles_maculatus Anopheles_melas Anopheles_merus Anopheles_minimus Anopheles_quadriannulatus Anopheles_sinensis Anopheles_stephensi Apis_mellifera Aptenodytes_forsteri Aquilegia_coerulea Arabidopsis_lyrata Arabidopsis_thaliana Arthrobotrys_oligospora Arthroderma_benhamiae Arthroderma_otae Ascaris_lumbricoides Ascaris_suum Ashbya_gossypii Aspergillus_carbonarius Aspergillus_clavatus Aspergillus_flavus Aspergillus_fumigatus Aspergillus_nidulans Aspergillus_niger Aspergillus_oryzae Aspergillus_ruber Aspergillus_terreus Astyanax_mexicanus Atta_cephalotes Aureobasidium_melanogenum Aureobasidium_pullulans Aureobasidium_subglaciale Aureococcus_anophagefferens Babesia_bovis Batrachochytrium_dendrobatidis Baudoinia_compniacensis Beauveria_bassiana Bigelowiella_natans Biomphalaria_glabrata Bipolaris_maydis Bipolaris_oryzae Bipolaris_sorokiniana Bipolaris_victoriae Bipolaris_zeicola Blastomyces_dermatitidis Blumeria_graminis Boechera_stricta Bombyx_mori Bos_grunniens Bos_taurus Botryobasidium_botryosum Botrytis_cinerea Brachypodium_distachyon Branchiostoma_floridae Brassica_oleracea Brassica_rapa Brettanomyces_bruxellensis Brugia_malayi Brugia_timori Buceros_rhinoceros Bursaphelenchus_xylophilus Byssochlamys_spectabilis Caenorhabditis_brenneri Caenorhabditis_briggsae Caenorhabditis_elegans Caenorhabditis_japonica Caenorhabditis_remanei Callithrix_jacchus Calypte_anna Camponotus_floridanus Candida_albicans Candida_dubliniensis Candida_glabrata Candida_guilliermondii Candida_lusitaniae Candida_maltosa Candida_orthopsilosis Candida_parapsilosis Candida_tenuis Candida_tropicalis Canis_familiaris Cannabis_sativa Capitella_teleta Capronia_coronata Capronia_epimyces Capronia_semiimmersa Capsaspora_owczarzaki Capsella_grandiflora Capsella_rubella Carica_papaya Cavia_porcellus Ceriporiopsis_subvermispora Chaetomium_globosum Chaetomium_thermophilum Chelonia_mydas Chlamydomonas_reinhardtii Chlorella_NC64A Chlorella_vulgaris Chlorocebus_sabaeus Choloepus_hoffmanni Chroomonas_mesostigmatica Cicer_arietinum Cimex_lectularius Ciona_intestinalis Ciona_savignyi Citrullus_lanatus Citrus_clementina Citrus_sinensis Cladophialophora_bantiana Cladophialophora_carrionii Cladophialophora_immunda Cladophialophora_psammophila Cladophialophora_yegresii Claviceps_purpurea Clavispora_lusitaniae Clonorchis_sinensis Coccidioides_immitis Coccidioides_posadasii Coccomyxa_subellipsoidea_C169 Cochliobolus_heterostrophus_C5 Colletotrichum_fioriniae Colletotrichum_gloeosporioides Colletotrichum_graminicola Colletotrichum_higginsianum Colletotrichum_orbiculare Colletotrichum_sublineola Coniosporium_apollinis Coprinopsis_cinerea Cordyceps_militaris Crassostrea_gigas Cryphonectria_parasitica Cryptococcus_gattii Cryptococcus_neoformans Cryptosporidium_hominis Cryptosporidium_muris Cryptosporidium_parvum Cucumis_sativus Culex_pipiens Culex_quinquefasciatus Cyanidioschyzon_merolae Cylicostephanus_goldi Cyphellophora_europaea Dacryopinax_sp Dactylellina_haptotyla Danaus_plexippus Danio_rerio Daphnia_pulex Dasypus_novemcinctus Debaryomyces_hansenii Dendroctonus_ponderosae Dichomitus_squalens Dictyocaulus_viviparus Dictyostelium_discoideum Dictyostelium_purpureum Diphyllobothrium_latum Dipodomys_ordii Dirofilaria_immitis Dothistroma_septosporum Dracunculus_medinensis Drechslerella_stenobrocha Drosophila_ananassae Drosophila_erecta Drosophila_grimshawi Drosophila_melanogaster Drosophila_mojavensis Drosophila_persimilis Drosophila_pseudoobscura Drosophila_sechellia Drosophila_simulans Drosophila_virilis Drosophila_willistoni Drosophila_yakuba Echinococcus_canadensis Echinococcus_multilocularis Echinops_telfairi Echinostoma_caproni Edhazardia_aedis Eimeria_tenella Elaeophora_elaphi Emiliania_huxleyi Encephalitozoon_cuniculi Encephalitozoon_hellem Encephalitozoon_intestinalis Encephalitozoon_romaleae Endocarpon_pusillum Entamoeba_dispar Entamoeba_histolytica Entamoeba_invadens Enterobius_vermicularis Enterocytozoon_bieneusi Equus_caballus Eremothecium_cymbalariae Erinaceus_europaeus Erysiphe_necator Eucalyptus_grandis Eutrema_salsugineum Eutypa_lata Exophiala_aquamarina Exophiala_dermatitidis Exophiala_mesophila Exophiala_oligosperma Exophiala_sideris Exophiala_spinifera Exophiala_xenobiotica Fasciola_hepatica Felis_catus Fibroporia_radiculosa Ficedula_albicollis Fomitopsis_pinicola Fonsecaea_pedrosoi Fragaria_vesca Fragilariopsis_cylindrus Fusarium_fujikuroi Fusarium_graminearum Fusarium_oxysporum Fusarium_pseudograminearum Fusarium_solani Fusarium_verticillioides Gadus_morhua Gaeumannomyces_graminis Galerina_marginata Gallus_gallus Gasterosteus_aculeatus Geospiza_fortis Giardia_lamblia Glarea_lozoyensis Globodera_pallida Gloeophyllum_trabeum Glycine_max Gongylonema_pulchrum Gorilla_gorilla Gossypium_raimondii Grosmannia_clavigera Guillardia_theta Gymnopus_luxurians Haemonchus_contortus Haemonchus_placei Halyomorpha_halys Harpegnathos_saltator Hebeloma_cylindrosporum Heliconius_melpomene Heligmosomoides_bakeri Helobdella_robusta Hemiselmis_andersenii Heterobasidion_annosum Heterobasidion_irregulare Heterorhabditis_bacteriophora Histoplasma_capsulatum Homo_sapiens Hordeum_vulgare Hyaloperonospora_arabidopsidis Hydatigera_taeniaeformis Hydnomerulius_pinastri Hydra_magnipapillata Hymenolepis_diminuta Hymenolepis_microstoma Hymenolepis_nana Ictidomys_tridecemlineatus Ixodes_scapularis Jaapia_argillacea Kazachstania_africana Kazachstania_naganishii Kluyveromyces_lactis Kluyveromyces_thermotolerans Kluyveromyces_waltii Komagataella_pastoris Kuraishia_capsulata Laccaria_amethystina Laccaria_bicolor Lachancea_kluyveri Lachancea_lanzarotensis Lachancea_thermotolerans Latimeria_chalumnae Leersia_perrieri Leishmania_braziliensis Leishmania_infantum Leishmania_major Leishmania_mexicana Lepisosteus_oculatus Leptinotarsa_decemlineata Leptosphaeria_maculans Linum_usitatissimum Litomosoides_sigmodontis Loa_loa Lodderomyces_elongisporus Lottia_gigantea Lotus_japonicus Loxodonta_africana Lucilia_cuprina Lutzomyia_longipalpis Macaca_fascicularis Macaca_mulatta Macrophomina_phaseolina Macropus_eugenii Magnaporthe_oryzae Magnaporthe_poae Malassezia_globosa Malassezia_sympodialis Malus_domestica Manihot_esculenta Marssonina_brunnea Medicago_truncatula Megaselia_scalaris Melampsora_laricipopulina Meleagris_gallopavo Melitaea_cinxia Meloidogyne_floridensis Meloidogyne_hapla Meloidogyne_incognita Mesocestoides_corti Metarhizium_acridum Metarhizium_album Metarhizium_anisopliae Metarhizium_brunneum Metarhizium_guizhouense Metarhizium_majus Metarhizium_robertsii Meyerozyma_guilliermondii Microbotryum_violaceum Microcebus_murinus Micromonas_pusilla Micromonas_sp_RCC299 Microsporidia_sp Microsporum_canis Microsporum_gypseum Millerozyma_farinosa Mimulus_guttatus Mixia_osmundae Mnemiopsis_leidyi Moniliophthora_perniciosa Moniliophthora_roreri Monodelphis_domestica Monosiga_brevicollis Mucor_circinelloides Mus_musculus Musa_acuminata Musca_domestica Mustela_putorius_furo Myceliophthora_thermophila Mycosphaerella_fijiensis Mycosphaerella_graminicola Myotis_brandtii Myotis_lucifugus Naegleria_gruberi Nasonia_vitripennis Naumovozyma_castellii Naumovozyma_dairenensis Necator_americanus Nectria_haematococca Nematocida_parisii_ertm1 Nematocida_sp Nematostella_vectensis Neofusicoccum_parvum Neosartorya_fischeri Neospora_caninum Neurospora_crassa Neurospora_discreta Neurospora_tetrasperma Nippostrongylus_brasiliensis Nomascus_leucogenys Nosema_apis Nosema_bombycis Nosema_ceranae Ochotona_princeps Octopus_bimaculoides Oesophagostomum_dentatum Ogataea_parapolymorpha Oidiodendron_maius Oikopleura_dioica Onchocerca_flexuosa Onchocerca_ochengi Onchocerca_volvulus Ophiocordyceps_sinensis Ophiostoma_piceae_uamh Ophisaurus_gracilis Opisthorchis_viverrini Ordospora_colligata Oreochromis_niloticus Ornithorhynchus_anatinus Oryctolagus_cuniculus Oryza_barthii Oryza_brachyantha Oryza_glaberrima Oryza_glumaepatula Oryza_indica Oryza_longistaminata Oryza_meridionalis Oryza_nivara Oryza_punctata Oryza_rufipogon Oryza_sativa Oryzias_latipes Ostreococcus_lucimarinus Ostreococcus_RCC809 Ostreococcus_tauri Otolemur_garnettii Ovis_aries Oxytricha_trifallax Pan_troglodytes Panicum_virgatum Papio_anubis Paracoccidioides_brasiliensis Paracoccidioides_sp_lutzii Paramecium_tetraurelia Parascaris_equorum Parastrongyloides_trichosuri Paxillus_involutus Paxillus_rubicundulus Pediculus_humanus Pelodiscus_sinensis Penicillium_chrysogenum Penicillium_digitatum Penicillium_expansum Penicillium_italicum Penicillium_marneffei Penicillium_oxalicum Penicillium_rubens Penicillium_solitum Pestalotiopsis_fici Petromyzon_marinus Phaeodactylum_tricornutum Phaeosphaeria_nodorum Phanerochaete_carnosa Phanerochaete_chrysosporium Phlebiopsis_gigantea Phlebotomus_papatasi Phoenix_dactylifera Phycomyces_blakesleeanus Physcomitrella_patens Phytophthora_capsici Phytophthora_infestans Phytophthora_kernoviae Phytophthora_lateralis Phytophthora_parasitica Phytophthora_ramorum Phytophthora_sojae Pichia_kudriavzevii Pichia_pastoris Pichia_stipitis Piloderma_croceum Piriformospora_indica Pisolithus_microcarpus Pisolithus_tinctorius Plasmodium_berghei Plasmodium_chabaudi Plasmodium_falciparum Plasmodium_knowlesi Plasmodium_vivax Plasmodium_yoelii Pleurotus_ostreatus Plicaturopsis_crispa Pneumocystis_carinii Pneumocystis_murina Podospora_anserina Poecilia_formosa Pogona_vitticeps Polysphondylium_pallidum Pongo_abelii Populus_trichocarpa Postia_placenta Pristionchus_exspectatus Pristionchus_pacificus Procavia_capensis Protopolystoma_xenopodis Prunus_mume Prunus_persica Pseudocercospora_fijiensis Pseudogymnoascus_destructans Pseudogymnoascus_pannorum Pseudozyma_antarctica Pseudozyma_aphidis Pseudozyma_brasiliensis Pseudozyma_flocculosa Pseudozyma_hubeiensis Pteropus_vampyrus Puccinia_graminis Puccinia_triticina Punctularia_strigosozonata Pyrenophora_teres Pyrenophora_triticirepentis Pythium_aphanidermatum Pythium_arrhenomanes Pythium_irregulare Pythium_iwayamai Pythium_ultimum Pythium_vexans Rattus_norvegicus Rhabditophanes_kr3021 Rhinocladiella_mackenziei Rhizoctonia_solani Rhizophagus_irregularis Rhizopus_oryzae Rhodnius_prolixus Rhodosporidium_toruloides Rhodotorula_glutinis Ricinus_communis RNAcompete_CONSTRUCTS Romanomermis_culicivorax Rozella_allomycis Saccharomyces_arboricola Saccharomyces_bayanus Saccharomyces_castellii Saccharomyces_cerevisiae Saccharomyces_kudriavzevii Saccharomyces_mikatae Saccharomyces_paradoxus Saccharomycetaceae_sp_ashbya_aceri Saccoglossus_kowalevskii Salix_purpurea Salpingoeca_rosetta Saprolegnia_parasitica Sarcophilus_harrisii Scedosporium_apiospermum Scheffersomyces_stipitis Schistocephalus_solidus Schistosoma_curassoni Schistosoma_haematobium Schistosoma_japonicum Schistosoma_mansoni Schistosoma_margrebowiei Schistosoma_mattheei Schistosoma_rodhaini Schizophyllum_commune Schizosaccharomyces_cryophilus Schizosaccharomyces_japonicus Schizosaccharomyces_octosporus Schizosaccharomyces_pombe Schmidtea_mediterranea Scleroderma_citrinum Sclerotinia_borealis Sclerotinia_sclerotiorum Selaginella_moellendorffii Serendipita_vermifera Serpula_lacrymans Setaria_italica Setosphaeria_turcica Soboliphyme_baturini Solanum_lycopersicum Solanum_tuberosum Solenopsis_invicta Sordaria_macrospora Sorex_araneus Sorghum_bicolor Spathaspora_passalidarum Sphaerobolus_stellatus Sphaerulina_musiva Spirometra_erinaceieuropaei Spizellomyces_punctatus Sporisorium_reilianum Sporobolomyces_roseus Sporothrix_brasiliensis Sporothrix_schenckii Spraguea_lophii Stachybotrys_chartarum Stachybotrys_chlorohalonata Stagonospora_nodorum Steinernema_carpocapsae Steinernema_feltiae Steinernema_glaseri Steinernema_monticolum Steinernema_scapterisci Strigamia_maritima Strongylocentrotus_purpuratus Strongyloides_papillosus Strongyloides_stercoralis Strongyloides_venezuelensis Strongylus_vulgaris Suillus_luteus Sus_scrofa Syphacia_muris Taenia_asiatica Taenia_solium Taeniopygia_guttata Takifugu_rubripes Talaromyces_marneffei Talaromyces_stipitatus Tarsius_syrichta Teladorsagia_circumcincta Tetrahymena_thermophila Tetranychus_urticae Tetraodon_nigroviridis Tetrapisispora_blattae Tetrapisispora_phaffii Thalassiosira_pseudonana Thecamonas_trahens Theileria_annulata Theileria_parva Thelazia_callipaeda Theobroma_cacao Thielavia_terrestris Tilletiaria_anomala Togninia_minima Torrubiella_hemipterigena Torulaspora_delbrueckii Toxocara_canis Toxoplasma_gondii Trachipleistophora_hominis Trametes_cinnabarina Tremella_mesenterica Tribolium_castaneum Trichinella_nativa Trichinella_spiralis Trichobilharzia_regenti Trichoderma_atroviride Trichoderma_reesei Trichoderma_virens Trichomonas_vaginalis Trichophyton_equinum Trichophyton_interdigitale Trichophyton_rubrum Trichophyton_soudanense Trichophyton_tonsurans Trichophyton_verrucosum Trichoplax_adhaerens Trichosporon_asahii Trichuris_muris Trichuris_suis Trichuris_trichiura Triticum_aestivum Triticum_urartu Trypanosoma_brucei Trypanosoma_congolense Trypanosoma_cruzi Trypanosoma_vivax Tuber_melanosporum Tulasnella_calospora Tupaia_belangeri Tursiops_truncatus Tyto_alba Uncinocarpus_reesii Ustilaginoidea_virens Ustilago_hordei Ustilago_maydis Vanderwaltozyma_polyspora Vavraia_culicis Verruconis_gallopava Verticillium_albo_atrum Verticillium_alfalfae Verticillium_dahliae Vicugna_pacos Vitis_vinifera Vittaforma_corneae Volvox_carteri Wallemia_ichthyophaga Wallemia_sebi Wickerhamomyces_ciferrii Wuchereria_bancrofti Xenopus_laevis Xenopus_tropicalis Xiphophorus_maculatus Yarrowia_lipolytica Zea_mays Zootermopsis_nevadensis Zygosaccharomyces_bailii Zygosaccharomyces_rouxii Zymoseptoria_tritici Motif model Threshold 7 mers - Escores PWMs - Energy PWMs - LogOdds Scan RBPs in my cart
Protein Scan
Scan an amino acid sequence to predict its binding motif Click for sample
Protein Scan - JPLE method (Under Construction)
Scan an amino acid sequence to predict its binding motif Click for sample
Motif Scan
Compare a given motif to all RBPs in the database Click for PWM, Alignment, IUPAC		Species Scan all species Acanthocheilonema_viteae Acremonium_chrysogenum Acyrthosiphon_pisum Aedes_aegypti Aegilops_tauschii Agaricus_bisporus Ailuropoda_melanoleuca Albugo_laibachii Alligator_sinensis Allomyces_macrogynus Alternaria_brassicicola Amanita_muscaria Amborella_trichopoda Amphimedon_queenslandica Anas_platyrhynchos Ancylostoma_caninum Ancylostoma_ceylanicum Ancylostoma_duodenale Angiostrongylus_cantonensis Angiostrongylus_costaricensis Anisakis_simplex Anncaliia_algerae Anolis_carolinensis Anopheles_albimanus Anopheles_arabiensis Anopheles_atroparvus Anopheles_christyi Anopheles_coluzzii Anopheles_culicifacies Anopheles_darlingi Anopheles_dirus Anopheles_epiroticus Anopheles_farauti Anopheles_funestus Anopheles_gambiae Anopheles_maculatus Anopheles_melas Anopheles_merus Anopheles_minimus Anopheles_quadriannulatus Anopheles_sinensis Anopheles_stephensi Apis_mellifera Aptenodytes_forsteri Aquilegia_coerulea Arabidopsis_lyrata Arabidopsis_thaliana Arthrobotrys_oligospora Arthroderma_benhamiae Arthroderma_otae Ascaris_lumbricoides Ascaris_suum Ashbya_gossypii Aspergillus_carbonarius Aspergillus_clavatus Aspergillus_flavus Aspergillus_fumigatus Aspergillus_nidulans Aspergillus_niger Aspergillus_oryzae Aspergillus_ruber Aspergillus_terreus Astyanax_mexicanus Atta_cephalotes Aureobasidium_melanogenum Aureobasidium_pullulans Aureobasidium_subglaciale Aureococcus_anophagefferens Babesia_bovis Batrachochytrium_dendrobatidis Baudoinia_compniacensis Beauveria_bassiana Bigelowiella_natans Biomphalaria_glabrata Bipolaris_maydis Bipolaris_oryzae Bipolaris_sorokiniana Bipolaris_victoriae Bipolaris_zeicola Blastomyces_dermatitidis Blumeria_graminis Boechera_stricta Bombyx_mori Bos_grunniens Bos_taurus Botryobasidium_botryosum Botrytis_cinerea Brachypodium_distachyon Branchiostoma_floridae Brassica_oleracea Brassica_rapa Brettanomyces_bruxellensis Brugia_malayi Brugia_timori Buceros_rhinoceros Bursaphelenchus_xylophilus Byssochlamys_spectabilis Caenorhabditis_brenneri Caenorhabditis_briggsae Caenorhabditis_elegans Caenorhabditis_japonica Caenorhabditis_remanei Callithrix_jacchus Calypte_anna Camponotus_floridanus Candida_albicans Candida_dubliniensis Candida_glabrata Candida_guilliermondii Candida_lusitaniae Candida_maltosa Candida_orthopsilosis Candida_parapsilosis Candida_tenuis Candida_tropicalis Canis_familiaris Cannabis_sativa Capitella_teleta Capronia_coronata Capronia_epimyces Capronia_semiimmersa Capsaspora_owczarzaki Capsella_grandiflora Capsella_rubella Carica_papaya Cavia_porcellus Ceriporiopsis_subvermispora Chaetomium_globosum Chaetomium_thermophilum Chelonia_mydas Chlamydomonas_reinhardtii Chlorella_NC64A Chlorella_vulgaris Chlorocebus_sabaeus Choloepus_hoffmanni Chroomonas_mesostigmatica Cicer_arietinum Cimex_lectularius Ciona_intestinalis Ciona_savignyi Citrullus_lanatus Citrus_clementina Citrus_sinensis Cladophialophora_bantiana Cladophialophora_carrionii Cladophialophora_immunda Cladophialophora_psammophila Cladophialophora_yegresii Claviceps_purpurea Clavispora_lusitaniae Clonorchis_sinensis Coccidioides_immitis Coccidioides_posadasii Coccomyxa_subellipsoidea_C169 Cochliobolus_heterostrophus_C5 Colletotrichum_fioriniae Colletotrichum_gloeosporioides Colletotrichum_graminicola Colletotrichum_higginsianum Colletotrichum_orbiculare Colletotrichum_sublineola Coniosporium_apollinis Coprinopsis_cinerea Cordyceps_militaris Crassostrea_gigas Cryphonectria_parasitica Cryptococcus_gattii Cryptococcus_neoformans Cryptosporidium_hominis Cryptosporidium_muris Cryptosporidium_parvum Cucumis_sativus Culex_pipiens Culex_quinquefasciatus Cyanidioschyzon_merolae Cylicostephanus_goldi Cyphellophora_europaea Dacryopinax_sp Dactylellina_haptotyla Danaus_plexippus Danio_rerio Daphnia_pulex Dasypus_novemcinctus Debaryomyces_hansenii Dendroctonus_ponderosae Dichomitus_squalens Dictyocaulus_viviparus Dictyostelium_discoideum Dictyostelium_purpureum Diphyllobothrium_latum Dipodomys_ordii Dirofilaria_immitis Dothistroma_septosporum Dracunculus_medinensis Drechslerella_stenobrocha Drosophila_ananassae Drosophila_erecta Drosophila_grimshawi Drosophila_melanogaster Drosophila_mojavensis Drosophila_persimilis Drosophila_pseudoobscura Drosophila_sechellia Drosophila_simulans Drosophila_virilis Drosophila_willistoni Drosophila_yakuba Echinococcus_canadensis Echinococcus_multilocularis Echinops_telfairi Echinostoma_caproni Edhazardia_aedis Eimeria_tenella Elaeophora_elaphi Emiliania_huxleyi Encephalitozoon_cuniculi Encephalitozoon_hellem Encephalitozoon_intestinalis Encephalitozoon_romaleae Endocarpon_pusillum Entamoeba_dispar Entamoeba_histolytica Entamoeba_invadens Enterobius_vermicularis Enterocytozoon_bieneusi Equus_caballus Eremothecium_cymbalariae Erinaceus_europaeus Erysiphe_necator Eucalyptus_grandis Eutrema_salsugineum Eutypa_lata Exophiala_aquamarina Exophiala_dermatitidis Exophiala_mesophila Exophiala_oligosperma Exophiala_sideris Exophiala_spinifera Exophiala_xenobiotica Fasciola_hepatica Felis_catus Fibroporia_radiculosa Ficedula_albicollis Fomitopsis_pinicola Fonsecaea_pedrosoi Fragaria_vesca Fragilariopsis_cylindrus Fusarium_fujikuroi Fusarium_graminearum Fusarium_oxysporum Fusarium_pseudograminearum Fusarium_solani Fusarium_verticillioides Gadus_morhua Gaeumannomyces_graminis Galerina_marginata Gallus_gallus Gasterosteus_aculeatus Geospiza_fortis Giardia_lamblia Glarea_lozoyensis Globodera_pallida Gloeophyllum_trabeum Glycine_max Gongylonema_pulchrum Gorilla_gorilla Gossypium_raimondii Grosmannia_clavigera Guillardia_theta Gymnopus_luxurians Haemonchus_contortus Haemonchus_placei Halyomorpha_halys Harpegnathos_saltator Hebeloma_cylindrosporum Heliconius_melpomene Heligmosomoides_bakeri Helobdella_robusta Hemiselmis_andersenii Heterobasidion_annosum Heterobasidion_irregulare Heterorhabditis_bacteriophora Histoplasma_capsulatum Homo_sapiens Hordeum_vulgare Hyaloperonospora_arabidopsidis Hydatigera_taeniaeformis Hydnomerulius_pinastri Hydra_magnipapillata Hymenolepis_diminuta Hymenolepis_microstoma Hymenolepis_nana Ictidomys_tridecemlineatus Ixodes_scapularis Jaapia_argillacea Kazachstania_africana Kazachstania_naganishii Kluyveromyces_lactis Kluyveromyces_thermotolerans Kluyveromyces_waltii Komagataella_pastoris Kuraishia_capsulata Laccaria_amethystina Laccaria_bicolor Lachancea_kluyveri Lachancea_lanzarotensis Lachancea_thermotolerans Latimeria_chalumnae Leersia_perrieri Leishmania_braziliensis Leishmania_infantum Leishmania_major Leishmania_mexicana Lepisosteus_oculatus Leptinotarsa_decemlineata Leptosphaeria_maculans Linum_usitatissimum Litomosoides_sigmodontis Loa_loa Lodderomyces_elongisporus Lottia_gigantea Lotus_japonicus Loxodonta_africana Lucilia_cuprina Lutzomyia_longipalpis Macaca_fascicularis Macaca_mulatta Macrophomina_phaseolina Macropus_eugenii Magnaporthe_oryzae Magnaporthe_poae Malassezia_globosa Malassezia_sympodialis Malus_domestica Manihot_esculenta Marssonina_brunnea Medicago_truncatula Megaselia_scalaris Melampsora_laricipopulina Meleagris_gallopavo Melitaea_cinxia Meloidogyne_floridensis Meloidogyne_hapla Meloidogyne_incognita Mesocestoides_corti Metarhizium_acridum Metarhizium_album Metarhizium_anisopliae Metarhizium_brunneum Metarhizium_guizhouense Metarhizium_majus Metarhizium_robertsii Meyerozyma_guilliermondii Microbotryum_violaceum Microcebus_murinus Micromonas_pusilla Micromonas_sp_RCC299 Microsporidia_sp Microsporum_canis Microsporum_gypseum Millerozyma_farinosa Mimulus_guttatus Mixia_osmundae Mnemiopsis_leidyi Moniliophthora_perniciosa Moniliophthora_roreri Monodelphis_domestica Monosiga_brevicollis Mucor_circinelloides Mus_musculus Musa_acuminata Musca_domestica Mustela_putorius_furo Myceliophthora_thermophila Mycosphaerella_fijiensis Mycosphaerella_graminicola Myotis_brandtii Myotis_lucifugus Naegleria_gruberi Nasonia_vitripennis Naumovozyma_castellii Naumovozyma_dairenensis Necator_americanus Nectria_haematococca Nematocida_parisii_ertm1 Nematocida_sp Nematostella_vectensis Neofusicoccum_parvum Neosartorya_fischeri Neospora_caninum Neurospora_crassa Neurospora_discreta Neurospora_tetrasperma Nippostrongylus_brasiliensis Nomascus_leucogenys Nosema_apis Nosema_bombycis Nosema_ceranae Ochotona_princeps Octopus_bimaculoides Oesophagostomum_dentatum Ogataea_parapolymorpha Oidiodendron_maius Oikopleura_dioica Onchocerca_flexuosa Onchocerca_ochengi Onchocerca_volvulus Ophiocordyceps_sinensis Ophiostoma_piceae_uamh Ophisaurus_gracilis Opisthorchis_viverrini Ordospora_colligata Oreochromis_niloticus Ornithorhynchus_anatinus Oryctolagus_cuniculus Oryza_barthii Oryza_brachyantha Oryza_glaberrima Oryza_glumaepatula Oryza_indica Oryza_longistaminata Oryza_meridionalis Oryza_nivara Oryza_punctata Oryza_rufipogon Oryza_sativa Oryzias_latipes Ostreococcus_lucimarinus Ostreococcus_RCC809 Ostreococcus_tauri Otolemur_garnettii Ovis_aries Oxytricha_trifallax Pan_troglodytes Panicum_virgatum Papio_anubis Paracoccidioides_brasiliensis Paracoccidioides_sp_lutzii Paramecium_tetraurelia Parascaris_equorum Parastrongyloides_trichosuri Paxillus_involutus Paxillus_rubicundulus Pediculus_humanus Pelodiscus_sinensis Penicillium_chrysogenum Penicillium_digitatum Penicillium_expansum Penicillium_italicum Penicillium_marneffei Penicillium_oxalicum Penicillium_rubens Penicillium_solitum Pestalotiopsis_fici Petromyzon_marinus Phaeodactylum_tricornutum Phaeosphaeria_nodorum Phanerochaete_carnosa Phanerochaete_chrysosporium Phlebiopsis_gigantea Phlebotomus_papatasi Phoenix_dactylifera Phycomyces_blakesleeanus Physcomitrella_patens Phytophthora_capsici Phytophthora_infestans Phytophthora_kernoviae Phytophthora_lateralis Phytophthora_parasitica Phytophthora_ramorum Phytophthora_sojae Pichia_kudriavzevii Pichia_pastoris Pichia_stipitis Piloderma_croceum Piriformospora_indica Pisolithus_microcarpus Pisolithus_tinctorius Plasmodium_berghei Plasmodium_chabaudi Plasmodium_falciparum Plasmodium_knowlesi Plasmodium_vivax Plasmodium_yoelii Pleurotus_ostreatus Plicaturopsis_crispa Pneumocystis_carinii Pneumocystis_murina Podospora_anserina Poecilia_formosa Pogona_vitticeps Polysphondylium_pallidum Pongo_abelii Populus_trichocarpa Postia_placenta Pristionchus_exspectatus Pristionchus_pacificus Procavia_capensis Protopolystoma_xenopodis Prunus_mume Prunus_persica Pseudocercospora_fijiensis Pseudogymnoascus_destructans Pseudogymnoascus_pannorum Pseudozyma_antarctica Pseudozyma_aphidis Pseudozyma_brasiliensis Pseudozyma_flocculosa Pseudozyma_hubeiensis Pteropus_vampyrus Puccinia_graminis Puccinia_triticina Punctularia_strigosozonata Pyrenophora_teres Pyrenophora_triticirepentis Pythium_aphanidermatum Pythium_arrhenomanes Pythium_irregulare Pythium_iwayamai Pythium_ultimum Pythium_vexans Rattus_norvegicus Rhabditophanes_kr3021 Rhinocladiella_mackenziei Rhizoctonia_solani Rhizophagus_irregularis Rhizopus_oryzae Rhodnius_prolixus Rhodosporidium_toruloides Rhodotorula_glutinis Ricinus_communis RNAcompete_CONSTRUCTS Romanomermis_culicivorax Rozella_allomycis Saccharomyces_arboricola Saccharomyces_bayanus Saccharomyces_castellii Saccharomyces_cerevisiae Saccharomyces_kudriavzevii Saccharomyces_mikatae Saccharomyces_paradoxus Saccharomycetaceae_sp_ashbya_aceri Saccoglossus_kowalevskii Salix_purpurea Salpingoeca_rosetta Saprolegnia_parasitica Sarcophilus_harrisii Scedosporium_apiospermum Scheffersomyces_stipitis Schistocephalus_solidus Schistosoma_curassoni Schistosoma_haematobium Schistosoma_japonicum Schistosoma_mansoni Schistosoma_margrebowiei Schistosoma_mattheei Schistosoma_rodhaini Schizophyllum_commune Schizosaccharomyces_cryophilus Schizosaccharomyces_japonicus Schizosaccharomyces_octosporus Schizosaccharomyces_pombe Schmidtea_mediterranea Scleroderma_citrinum Sclerotinia_borealis Sclerotinia_sclerotiorum Selaginella_moellendorffii Serendipita_vermifera Serpula_lacrymans Setaria_italica Setosphaeria_turcica Soboliphyme_baturini Solanum_lycopersicum Solanum_tuberosum Solenopsis_invicta Sordaria_macrospora Sorex_araneus Sorghum_bicolor Spathaspora_passalidarum Sphaerobolus_stellatus Sphaerulina_musiva Spirometra_erinaceieuropaei Spizellomyces_punctatus Sporisorium_reilianum Sporobolomyces_roseus Sporothrix_brasiliensis Sporothrix_schenckii Spraguea_lophii Stachybotrys_chartarum Stachybotrys_chlorohalonata Stagonospora_nodorum Steinernema_carpocapsae Steinernema_feltiae Steinernema_glaseri Steinernema_monticolum Steinernema_scapterisci Strigamia_maritima Strongylocentrotus_purpuratus Strongyloides_papillosus Strongyloides_stercoralis Strongyloides_venezuelensis Strongylus_vulgaris Suillus_luteus Sus_scrofa Syphacia_muris Taenia_asiatica Taenia_solium Taeniopygia_guttata Takifugu_rubripes Talaromyces_marneffei Talaromyces_stipitatus Tarsius_syrichta Teladorsagia_circumcincta Tetrahymena_thermophila Tetranychus_urticae Tetraodon_nigroviridis Tetrapisispora_blattae Tetrapisispora_phaffii Thalassiosira_pseudonana Thecamonas_trahens Theileria_annulata Theileria_parva Thelazia_callipaeda Theobroma_cacao Thielavia_terrestris Tilletiaria_anomala Togninia_minima Torrubiella_hemipterigena Torulaspora_delbrueckii Toxocara_canis Toxoplasma_gondii Trachipleistophora_hominis Trametes_cinnabarina Tremella_mesenterica Tribolium_castaneum Trichinella_nativa Trichinella_spiralis Trichobilharzia_regenti Trichoderma_atroviride Trichoderma_reesei Trichoderma_virens Trichomonas_vaginalis Trichophyton_equinum Trichophyton_interdigitale Trichophyton_rubrum Trichophyton_soudanense Trichophyton_tonsurans Trichophyton_verrucosum Trichoplax_adhaerens Trichosporon_asahii Trichuris_muris Trichuris_suis Trichuris_trichiura Triticum_aestivum Triticum_urartu Trypanosoma_brucei Trypanosoma_congolense Trypanosoma_cruzi Trypanosoma_vivax Tuber_melanosporum Tulasnella_calospora Tupaia_belangeri Tursiops_truncatus Tyto_alba Uncinocarpus_reesii Ustilaginoidea_virens Ustilago_hordei Ustilago_maydis Vanderwaltozyma_polyspora Vavraia_culicis Verruconis_gallopava Verticillium_albo_atrum Verticillium_alfalfae Verticillium_dahliae Vicugna_pacos Vitis_vinifera Vittaforma_corneae Volvox_carteri Wallemia_ichthyophaga Wallemia_sebi Wickerhamomyces_ciferrii Wuchereria_bancrofti Xenopus_laevis Xenopus_tropicalis Xiphophorus_maculatus Yarrowia_lipolytica Zea_mays Zootermopsis_nevadensis Zygosaccharomyces_bailii Zygosaccharomyces_rouxii Zymoseptoria_tritici Search exact length

Last updated: 7-5-2025 Database Build 2_00

Current database contents: 34746 RBP binding motifs(504 from direct experiments), out of a total of 149219 Eukaryotic RBPs from 67 families in 691 species