CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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ZScore
RBP info
PFMs
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By Species
Acyrtosiphon_pisum
Aedes_aegypti
Agaricus_bisporus
Ailuropoda_melanoleuca
Allomyces_macrogynus
Alternaria_brassicicola
Amphimedon_queenslandica
Anolis_carolinensis
Anopheles_gambiae
Apis_mellifera
Arabidopsis_lyrata
Arabidopsis_thaliana
Arthroderma_benhamiae
Ashbya_gossypii
Aspergillus_carbonarius
Aspergillus_clavatus
Aspergillus_flavus
Aspergillus_fumigatus
Aspergillus_nidulans
Aspergillus_niger
Aspergillus_oryzae
Aspergillus_terreus
Aureococcus_anophagefferens
Babesia_bovis
Batrachochytrium_dendrobatidis
Bigelowiella_natans
Blastomyces_dermatitidis
Bombyx_mori
Bos_taurus
Botrytis_cinerea
Brachypodium_distachyon
Branchiostoma_floridae
Brugia_malayi
Caenorhabditis_brenneri
Caenorhabditis_briggsae
Caenorhabditis_elegans
Caenorhabditis_japonica
Caenorhabditis_remanei
Callithrix_jacchus
Candida_albicans
Candida_dubliniensis
Candida_glabrata
Candida_guilliermondii
Candida_lusitaniae
Candida_parapsilosis
Candida_tropicalis
Canis_familiaris
Cannabis_sativa
Capitella_teleta
Capsaspora_owczarzaki
Cavia_porcellus
Chaetomium_globosum
Chlamydomonas_reinhardtii
Chlorella_NC64A
Chlorella_vulgaris
Choloepus_hoffmanni
Ciona_intestinalis
Ciona_savignyi
Coccidioides_immitis
Coccidioides_posadasii
Coccomyxa_C_169
Cochliobolus_heterostrophus_C5
Colletotrichum_graminicola
Coprinopsis_cinerea
Cryphonectria_parasitica
Cryptococcus_neoformans
Cryptosporidium_hominis
Cryptosporidium_muris
Cryptosporidium_parvum
Cucumis_sativus
Culex_pipiens
Culex_quinquefasciatus
Cyanidioschyzon_merolae
Danio_rerio
Daphnia_pulex
Dasypus_novemcinctus
Debaryomyces_hansenii
Dictyostelium_discoideum
Dictyostelium_purpureum
Dipodomys_ordii
Drosophila_ananassae
Drosophila_erecta
Drosophila_grimshawi
Drosophila_melanogaster
Drosophila_mojavensis
Drosophila_persimilis
Drosophila_pseudoobscura
Drosophila_sechellia
Drosophila_simulans
Drosophila_virilis
Drosophila_willistoni
Drosophila_yakuba
Echinops_telfairi
Emiliania_huxleyi
Encephalitozoon_cuniculi
Encephalitozoon_intestinalis
Entamoeba_dispar
Entamoeba_histolytica
Entamoeba_invadens
Enterocytozoon_bieneusi
Equus_caballus
Erinaceus_europaeus
Felis_catus
Fragilariopsis_cylindrus
Fusarium_graminearum
Fusarium_oxysporum
Fusarium_verticillioides
Gallus_gallus
Gasterosteus_aculeatus
Giardia_lamblia
Glycine_max
Gorilla_gorilla
Guillardia_theta
Helobdella_robusta
Hemiselmis_andersenii
Heterobasidion_annosum
Histoplasma_capsulatum
Homo_sapiens
Hydra_magnipapillata
Ixodes_scapularis
Kluyveromyces_lactis
Kluyveromyces_thermotolerans
Kluyveromyces_waltii
Laccaria_bicolor
Lachancea_kluyveri
Leishmania_braziliensis
Leishmania_infantum
Leishmania_major
Leishmania_mexicana
Loa_loa
Lodderomyces_elongisporus
Lottia_gigantea
Lotus_japonicus
Loxodonta_africana
Macaca_mulatta
Macropus_eugenii
Magnaporthe_oryzae
Malassezia_globosa
Malus_x_domestica
Manihot_esculenta
Medicago_truncatula
Melampsora_laricis_populina
Meleagris_gallopavo
Meloidogyne_incognita
Microcebus_murinus
Micromonas_pusilla
Microsporum_canis
Microsporum_gypseum
Mimulus_guttatus
Moniliophthora_perniciosa
Monodelphis_domestica
Monosiga_brevicollis
Mucor_circinelloides
Mus_musculus
Myceliophthora_thermophila
Mycosphaerella_fijiensis
Mycosphaerella_graminicola
Myotis_lucifugus
Naegleria_gruberi
Nasonia_vitripennis
Nectria_haematococca
Nematostella_vectensis
Neosartorya_fischeri
Neospora_caninum
Neurospora_crassa
Neurospora_discreta
Neurospora_tetrasperma
Ochotona_princeps
Oikopleura_dioica
Ornithorhynchus_anatinus
Oryctolagus_cuniculus
Oryza_indica
Oryza_sativa
Oryzias_latipes
Ostreococcus_lucimarinus
Ostreococcus_RCC809
Ostreococcus_tauri
Otolemur_garnettii
Pan_troglodytes
Paracoccidioides_brasiliensis
Paramecium_tetraurelia
Pediculus_humanus
Penicillium_chrysogenum
Penicillium_marneffei
Phaeodactylum_tricornutum
Phaeosphaeria_nodorum
Phanerochaete_chrysosporium
Phoenix_dactylifera
Phycomyces_blakesleeanus
Physcomitrella_patens
Phytophthora_capsici
Phytophthora_infestans
Phytophthora_ramorum
Phytophthora_sojae
Pichia_pastoris
Pichia_stipitis
Plasmodium_berghei
Plasmodium_chabaudi
Plasmodium_falciparum
Plasmodium_knowlesi
Plasmodium_vivax
Plasmodium_yoelii
Pleurotus_ostreatus
Pneumocystis_carinii
Podospora_anserina
Polysphondylium_pallidum
Pongo_pygmaeus
Populus_trichocarpa
Postia_placenta
Pristionchus_pacificus
Procavia_capensis
Prunus_persica
Pteropus_vampyrus
Puccinia_graminis
Puccinia_triticina
Pyrenophora_tritici_repentis
Rattus_norvegicus
Rhizopus_oryzae
Ricinus_communis
RNAcompete_CONSTRUCTS
Saccharomyces_bayanus
Saccharomyces_castellii
Saccharomyces_cerevisiae
Saccharomyces_kudriavzevii
Saccharomyces_mikatae
Saccharomyces_paradoxus
Salpingoeca_rosetta
Saprolegnia_parasitica
Schistosoma_japonicum
Schistosoma_mansoni
Schizophyllum_commune
Schizosaccharomyces_cryophilus
Schizosaccharomyces_japonicus
Schizosaccharomyces_octosporus
Schizosaccharomyces_pombe
Sclerotinia_sclerotiorum
Selaginella_moellendorfii
Serpula_lacrymans
Sorex_araneus
Sorghum_bicolor
Spermophilus_tridecemlineatus
Spizellomyces_punctatus
Sporobolomyces_roseus
Stagonospora_nodorum
Strongylocentrotus_purpuratus
Sus_scrofa
Taeniopygia_guttata
Takifugu_rubripes
Tarsius_syrichta
Tetrahymena_thermophila
Tetraodon_nigroviridis
Thalassiosira_pseudonana
Thecamonas_trahens
Theileria_annulata
Theileria_parva
Thielavia_terrestris
Toxoplasma_gondii
Tremella_mesenterica
Tribolium_castaneum
Trichoderma_atroviride
Trichoderma_reesei
Trichoderma_virens
Trichomonas_vaginalis
Trichophyton_equinum
Trichophyton_rubrum
Trichophyton_tonsurans
Trichophyton_verrucosum
Trichoplax_adhaerens
Trypanosoma_brucei
Trypanosoma_congolense
Trypanosoma_cruzi
Trypanosoma_vivax
Tuber_melanosporum
Tupaia_belangeri
Tursiops_truncatus
Uncinocarpus_reesii
Ustilago_maydis
Vanderwaltozyma_polyspora
Verticillium_albo_atrum
Verticillium_dahliae
Vicugna_pacos
Vitis_vinifera
Volvox_carteri
Wuchereria_bancrofti
Xenopus_laevis
Xenopus_tropicalis
Yarrowia_lipolytica
Zea_mays
Zygosaccharomyces_rouxii
By Family
C2H2 ZF
C2H2 ZF,CCCH ZF
C2H2 ZF,CCHC ZF
C2H2 ZF,KH
C2H2 ZF,RanBP ZF,RRM
C2H2 ZF,RRM
CCCH ZF
CCCH ZF,CCHC ZF
CCCH ZF,CCHC ZF,RanBP ZF
CCCH ZF,CCHC ZF,RRM
CCCH ZF,CSD
CCCH ZF,KH
CCCH ZF,PUF
CCCH ZF,RanBP ZF
CCCH ZF,RanBP ZF,RRM
CCCH ZF,RRM
CCCH ZF,YTH
CCHC ZF
CCHC ZF,CSD
CCHC ZF,CSD,RRM
CCHC ZF,CSD,S1
CCHC ZF,KH
CCHC ZF,KH,RanBP ZF
CCHC ZF,KH,RRM
CCHC ZF,RanBP ZF
CCHC ZF,RRM
CCHC ZF,S1
CCHC ZF,SAM
CCHH ZF
CSD
CSD,KH,S1
CSD,RRM
CSD,S1
CSD,SAM
KH
KH,RanBP ZF
KH,RanBP ZF,RRM
KH,RRM
KH,S1
KH,SAM
La
La,RRM
La,SAM
PUF
PUF,RRM
RanBP ZF
RanBP ZF,RRM
RanBP ZF,SAM
RRM
RRM,SAM
RRM,YTH
S1
SAM
Unknown
YTH
Entire dataset
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