CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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U2AF1L4
(
Equus caballus
)
CCCH ZF,RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
PF00076 (RRM_1)
IPR000571
IPR000504
ENSECAG00000017941
T00496_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSECAP00000015615
CCCH ZF
13
39
KDKVNCSFYFKIGACRHGDRCSRLHNK
ENSECAP00000015615
RRM
82
141
FEEVFTELQEKYGEIEEMNVCDNLGDHLVGNVYVKFRREEDAERAVAELNNRWFNGQAVH
ENSECAP00000015615
CCCH ZF
149
175
DFRESCCRQYEMGECTRGGFCNFMHLR
Links
Other
CCCH ZF,RRM
family RBPs
Other
Equus caballus
RBPs
95 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
TIAL1
Callithrix jacchus
ENSCJAG00000019682
I
0.000
TIAL1
Homo sapiens
ENSG00000151923
D
0.000
TIAL1
Macaca mulatta
ENSMMUG00000001472
I
0.000
TIAL1
Monodelphis domestica
ENSMODG00000008865
I
0.000