cassava31400.valid.m1 (Manihot esculenta)
CCCH ZF,RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH)
PF00076 (RRM_1) 		IPR000571
IPR000504 		cassava31400.valid.m1 T00845_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
cassava31400.valid.m1 CCCH ZF 189 214
cassava31400.valid.m1 RRM 350 410

Links

Other CCCH ZF,RRM family RBPs
Other Manihot esculenta RBPs

22 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Ame_R009999 Ailuropoda melanoleuca Ame_R009999 N 0.000
MKI67IP Anolis carolinensis ENSACAG00000004655 N 0.000
MK67I_BOVIN Bos taurus ENSBTAG00000019387 N 0.000
MKI67IP Canis familiaris ENSCAFG00000004710 N 0.000
MKI67IP Choloepus hoffmanni ENSCHOG00000002227 N 0.000
LOC100386303 Callithrix jacchus ENSCJAG00000013386 N 0.000
MKI67IP Cavia porcellus ENSCPOG00000007472 N 0.000
LOC100055172 Equus caballus ENSECAG00000018478 N 0.000
MKI67IP Erinaceus europaeus ENSEEUG00000008535 N 0.000
MKI67IP Felis catus ENSFCAG00000010787 N 0.000
MKI67IP Homo sapiens ENSG00000155438 N 0.000
MKI67IP Gallus gallus ENSGALG00000011650 N 0.000
MKI67IP Gorilla gorilla ENSGGOG00000023498 N 0.000
ENSGGOG00000025506 Gorilla gorilla ENSGGOG00000025506 N 0.000
ENSGGOG00000025617 Gorilla gorilla ENSGGOG00000025617 N 0.000
MKI67IP Loxodonta africana ENSLAFG00000030731 N 0.000
MKI67IP Meleagris gallopavo ENSMGAG00000011953 N 0.000
MKI67IP Microcebus murinus ENSMICG00000015787 N 0.000
ENSMMUG00000012234 Macaca mulatta ENSMMUG00000012234 N 0.000
ENSMMUG00000019843 Macaca mulatta ENSMMUG00000019843 N 0.000
MKI67IP Macaca mulatta ENSMMUG00000020928 N 0.000
ENSMMUG00000020929 Macaca mulatta ENSMMUG00000020929 N 0.000
XR_012409.1 Macaca mulatta ENSMMUG00000022731 N 0.000
XM_001364715.1 Monodelphis domestica ENSMODG00000000152 N 0.000
ENSMODG00000008447 Monodelphis domestica ENSMODG00000008447 N 0.000
Mki67ip Mus musculus ENSMUSG00000026377 N 0.000
MKI67IP Ornithorhynchus anatinus ENSOANG00000007522 N 0.000
MKI67IP Otolemur garnettii ENSOGAG00000016968 N 0.000
ENSPPYG00000018557 Pongo pygmaeus ENSPPYG00000018557 N 0.000
ENSPPYG00000025875 Pongo pygmaeus ENSPPYG00000025875 N 0.000
MKI67IP Pan troglodytes ENSPTRG00000012419 N 0.000
MKI67IP Pteropus vampyrus ENSPVAG00000016707 N 0.000
Mki67ip Rattus norvegicus ENSRNOG00000025701 N 0.000
MKI67IP Sorex araneus ENSSARG00000006252 N 0.000
MKI67IP Tupaia belangeri ENSTBEG00000001123 N 0.000
MKI67IP Tetraodon nigroviridis ENSTNIG00000017831 N 0.000
MKI67IP Tursiops truncatus ENSTTRG00000005849 N 0.000
MKI67IP Vicugna pacos ENSVPAG00000005847 N 0.000
mki67ip Xenopus tropicalis ENSXETG00000000839 N 0.000
Q7SYS2 Xenopus laevis Q7SYS2 N 0.000