CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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PMAA_016150
(
Penicillium marneffei
)
CCCH ZF,RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
PF00076 (RRM_1)
IPR000571
IPR000504
PMAA_016150
T01121_0.6
Superfamily (2011-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
PMAA_016150.t1
CCCH ZF
13
39
QDKVNCSFYYKIGACRHGDRCSRKHVK
PMAA_016150.t1
RRM
71
134
HFDAFYEDIWCEMCKYGEIEEIVVCDNNNDHLIGNVYARFKYEDSAQAACDALNSRWYAARPVY
PMAA_016150.t1
CCCH ZF
142
168
DFREACCRLNSGEGCVRGGFCNFIHRK
Links
Other
CCCH ZF,RRM
family RBPs
Other
Penicillium marneffei
RBPs
46 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
SOCG_01961
Schizosaccharomyces octosporus
SOCG_01961
N
0.000