CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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ZC3H4
(
Macaca mulatta
)
CCCH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
IPR000571
ENSMMUG00000014709
T02930_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSMMUP00000019298
CCCH ZF
391
416
KGKVICKYFVEGRCTWGDHCNFSHDI
ENSMMUP00000019298
CCCH ZF
420
445
KKRELCKFYITGFCARAENCPYMHGD
ENSMMUP00000019298
CCCH ZF
446
469
FPCKLYHTTGNCINGDDCMFSHDP
ENSMMUP00000031554
CCCH ZF
403
428
KGKVICKYFVEGRCTWGDHCNFSHDI
ENSMMUP00000031554
CCCH ZF
432
457
KKRELCKFYITGFCARAENCPYMHDI
ENSMMUP00000031554
CCCH ZF
462
481
LYHTTGNCINGDDCMFSHDP
Links
Other
CCCH ZF
family RBPs
Other
Macaca mulatta
RBPs
35 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
30170.m013734
Ricinus communis
30170.m013734
N
0.000
AT3G26560
Arabidopsis thaliana
AT3G26560-TAIR-G
N
0.000
BGIOSIBCE006610
Oryza indica
BGIOSIBCE006610
N
0.000
BRADI3G13460
Brachypodium distachyon
BRADI3G13460
N
0.000
cassava6632.valid.m1
Manihot esculenta
cassava6632.valid.m1
N
0.000
Cucsa.133580
Cucumis sativus
Cucsa.133580
N
0.000
GRMZM2G029258
Zea mays
GRMZM2G029258
N
0.000
LjSGA_089147.1
Lotus japonicus
LjSGA_089147.1
N
0.000
LOC_Os02g19860
Oryza sativa
LOC_Os02g19860
N
0.000
Medtr1g143710
Medicago truncatula
Medtr1g143710
N
0.000
mgf003625m
Mimulus guttatus
mgf003625m
N
0.000
PK14265.1
Cannabis sativa
PK14265.1
N
0.000
B9I516_POPTR
Populus trichocarpa
POPTR_0012s01120
N
0.000
B9N9A7_POPTR
Populus trichocarpa
POPTR_0015s05960
N
0.000
ppa000417m
Prunus persica
ppa000417m
N
0.000
SB01G044300
Sorghum bicolor
Sb01g044300
N
0.000