CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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TMA46
(
Saccharomyces cerevisiae
)
CCCH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
IPR000571
YOR091W
T04193_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
YOR091W
CCCH ZF
92
113
VCALFKLGNCNKGAKCKFSHDL
Links
Other
CCCH ZF
family RBPs
Other
Saccharomyces cerevisiae
RBPs
7 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
20338_Multiple
Saccharomyces mikatae
20338_Multiple
N
1.000
20661_YOR091W
Saccharomyces paradoxus
20661_YOR091W
N
1.000
22901_YOR091W
Saccharomyces bayanus
22901_YOR091W
N
1.000
A7TLF2_VANPO
Vanderwaltozyma polyspora
A7TLF2_VANPO
N
0.808
ACL082W
Ashbya gossypii
ACL082W
N
0.731
CAGL0J08679g
Candida glabrata
CAGL0J08679g
N
0.808
Scas_Contig578.9
Saccharomyces castellii
Scas_Contig578.9
N
0.769