CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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How to cite
LOC_Os01g36170
(
Oryza sativa
)
CCHC ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
IPR001878
LOC_Os01g36170
T10800_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
LOC_Os01g36170.1
CCHC ZF
661
678
RLCFNCFEPGHFADKCPK
Links
Other
CCHC ZF
family RBPs
Other
Oryza sativa
RBPs
599 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
GF10644
Drosophila ananassae
FBgn0087685
N
0.000
GG14426
Drosophila erecta
FBgn0106685
N
0.000
GH14884
Drosophila grimshawi
FBgn0122359
N
0.000
GL26440
Drosophila persimilis
FBgn0164022
N
0.000
GM14843
Drosophila sechellia
FBgn0169764
N
0.000
GD14016
Drosophila simulans
FBgn0185712
N
0.000
GJ13002
Drosophila virilis
FBgn0200236
N
0.000
GK17383
Drosophila willistoni
FBgn0219382
N
0.000
GE21617
Drosophila yakuba
FBgn0238869
N
0.000
GA23671-RA
Drosophila pseudoobscura
FBgn0245071
N
0.000
CG42458
Drosophila melanogaster
FBgn0259935
N
0.000