LOC_Os01g36170 (Oryza sativa)
CCHC ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC) IPR001878 LOC_Os01g36170 T10800_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
LOC_Os01g36170.1 CCHC ZF 661 678

Links

Other CCHC ZF family RBPs
Other Oryza sativa RBPs

599 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
62194 Helobdella robusta 62194 I 0.000
AAH44085 Xenopus laevis AAH44085 I 0.000
AAH44265 Xenopus laevis AAH44265 I 0.000
AAH46668 Xenopus laevis AAH46668 I 0.000
AAH71160 Xenopus laevis AAH71160 I 0.000
AGAP004592 Anopheles gambiae AGAP004592 I 0.000
amel4_ncbi_hmm6583 Apis mellifera amel4_ncbi_hmm6583 I 0.000
Ame_R004936 Ailuropoda melanoleuca Ame_R004936 I 0.000
Ame_R018370 Ailuropoda melanoleuca Ame_R018370 I 0.000
BGIBMGA010178 Bombyx mori BGIBMGA010178 I 0.000
CPIJ008634 Culex quinquefasciatus CPIJ008634 I 0.000
CpipJ_CPIJ008634 Culex pipiens CpipJ_CPIJ008634 I 0.000
DGIL_AUG5s17730g6t1 Acyrtosiphon pisum DGIL_AUG5s17730g6t1 I 0.000
SRSF6 Anolis carolinensis ENSACAG00000002061 I 0.000
ENSACAG00000004096 Anolis carolinensis ENSACAG00000004096 N 0.000
SRSF5 Anolis carolinensis ENSACAG00000005143 I 0.000
ENSACAG00000005544 Anolis carolinensis ENSACAG00000005544 I 0.000
SFRS6_BOVIN Bos taurus ENSBTAG00000008527 I 0.000
A6H7B7_BOVIN Bos taurus ENSBTAG00000011596 I 0.000
A7MB38_BOVIN Bos taurus ENSBTAG00000013309 I 0.000
Q9XSS6_CANFA Canis familiaris ENSCAFG00000009289 N 0.000
SRSF4 Canis familiaris ENSCAFG00000011669 N 0.000
SRSF5 Canis familiaris ENSCAFG00000016589 I 0.000
SRSF4 Choloepus hoffmanni ENSCHOG00000013858 N 0.000
ENSCING00000004873 Ciona intestinalis ENSCING00000004873 I 0.000
ENSCING00000011362 Ciona intestinalis ENSCING00000011362 N 0.000
ENSCING00000012370 Ciona intestinalis ENSCING00000012370 I 0.000
LOC100402973 Callithrix jacchus ENSCJAG00000009971 I 0.000
ENSCJAG00000010895 Callithrix jacchus ENSCJAG00000010895 N 0.000
A6MLI3_CALJA Callithrix jacchus ENSCJAG00000014884 I 0.000
SRSF6 Callithrix jacchus ENSCJAG00000017888 I 0.000
ENSCJAG00000031736 Callithrix jacchus ENSCJAG00000031736 N 0.000
SRSF5 Cavia porcellus ENSCPOG00000005949 I 0.000
SRSF4 Cavia porcellus ENSCPOG00000007263 I 0.000
SRSF6 Cavia porcellus ENSCPOG00000011761 I 0.000
ENSCSAVG00000002581 Ciona savignyi ENSCSAVG00000002581 I 0.000
srsf6a Danio rerio ENSDARG00000013729 I 0.000
srsf6b Danio rerio ENSDARG00000016783 I 0.000
srsf5b Danio rerio ENSDARG00000027734 I 0.000
srsf5a Danio rerio ENSDARG00000029818 I 0.000
SRSF4 Dasypus novemcinctus ENSDNOG00000000968 I 0.000
SRSF6 Dasypus novemcinctus ENSDNOG00000008410 I 0.000
Srsf6 Dipodomys ordii ENSDORG00000001945 I 0.000
Srsf4 Dipodomys ordii ENSDORG00000002459 I 0.000
SRSF4 Equus caballus ENSECAG00000021350 N 0.000
LOC100053264 Equus caballus ENSECAG00000026873 I 0.000
SRSF4 Erinaceus europaeus ENSEEUG00000008479 I 0.000
SRSF6 Echinops telfairi ENSETEG00000006221 I 0.000
SRSF4 Echinops telfairi ENSETEG00000009774 N 0.000
SRSF5 Echinops telfairi ENSETEG00000020396 I 0.000
SRSF5 Felis catus ENSFCAG00000008848 I 0.000
SRSF5 Homo sapiens ENSG00000100650 D 0.000
SRSF4 Homo sapiens ENSG00000116350 I 0.000
SRSF6 Homo sapiens ENSG00000124193 I 0.000
SRSF4 Gasterosteus aculeatus ENSGACG00000002389 I 0.000
SRSF6 Gasterosteus aculeatus ENSGACG00000006084 I 0.000
ENSGACG00000011761 Gasterosteus aculeatus ENSGACG00000011761 I 0.000
SFRS4 Gallus gallus ENSGALG00000001411 N 0.000
Q5ZLF9_CHICK Gallus gallus ENSGALG00000009421 I 0.000
Q5ZKT4_CHICK Gallus gallus ENSGALG00000009484 I 0.000
SRSF4 Gorilla gorilla ENSGGOG00000002444 N 0.000
SRSF6 Gorilla gorilla ENSGGOG00000009808 I 0.000
SRSF5 Gorilla gorilla ENSGGOG00000016462 I 0.000
SRSF4 Loxodonta africana ENSLAFG00000002575 I 0.000
SRSF5 Loxodonta africana ENSLAFG00000005260 I 0.000
SRSF6 Macropus eugenii ENSMEUG00000014615 I 0.000
SRSF4 Meleagris gallopavo ENSMGAG00000002400 I 0.000
ENSMGAG00000011888 Meleagris gallopavo ENSMGAG00000011888 I 0.000
SRSF6 Microcebus murinus ENSMICG00000008537 I 0.000
SRSF4 Microcebus murinus ENSMICG00000008965 N 0.000
SRSF5 Myotis lucifugus ENSMLUG00000011939 I 0.000
SRSF4 Myotis lucifugus ENSMLUG00000014770 I 0.000
SRSF4 Macaca mulatta ENSMMUG00000007110 I 0.000
SRSF5 Macaca mulatta ENSMMUG00000022407 I 0.000
SRSF6 Monodelphis domestica ENSMODG00000003107 I 0.000
SRSF4 Monodelphis domestica ENSMODG00000011052 I 0.000
SRSF5 Monodelphis domestica ENSMODG00000011362 I 0.000
Srsf6 Mus musculus ENSMUSG00000016921 I 0.000
Srsf5 Mus musculus ENSMUSG00000021134 I 0.000
Srsf4 Mus musculus ENSMUSG00000028911 I 0.000
SRSF5 Ornithorhynchus anatinus ENSOANG00000013336 I 0.000
SRSF4 Ornithorhynchus anatinus ENSOANG00000015169 N 0.000
SRSF4 Oryctolagus cuniculus ENSOCUG00000001837 I 0.000
SRSF5 Oryctolagus cuniculus ENSOCUG00000009274 I 0.000
SRSF5 Otolemur garnettii ENSOGAG00000015122 I 0.000
SRSF5 Ochotona princeps ENSOPRG00000008286 I 0.000
SRSF4 Ochotona princeps ENSOPRG00000010098 I 0.000
SRSF6 Oryzias latipes ENSORLG00000003530 I 0.000
SRSF5 Oryzias latipes ENSORLG00000009268 I 0.000
SRSF4 Oryzias latipes ENSORLG00000009430 I 0.000
SRSF4 Procavia capensis ENSPCAG00000009879 I 0.000
SRSF6 Procavia capensis ENSPCAG00000010954 I 0.000
ENSPPYG00000001629 Pongo pygmaeus ENSPPYG00000001629 I 0.000
ENSPPYG00000005945 Pongo pygmaeus ENSPPYG00000005945 I 0.000
ENSPPYG00000011019 Pongo pygmaeus ENSPPYG00000011019 I 0.000
SRSF4 Pan troglodytes ENSPTRG00000000445 I 0.000
SRSF5 Pan troglodytes ENSPTRG00000006488 I 0.000
SRSF6 Pteropus vampyrus ENSPVAG00000015232 I 0.000
Sfrs5 Rattus norvegicus ENSRNOG00000005513 I 0.000
Sfrs6 Rattus norvegicus ENSRNOG00000006380 I 0.000
Sfrs4 Rattus norvegicus ENSRNOG00000010007 I 0.000
SRSF5 Sus scrofa ENSSSCG00000002312 I 0.000
SRSF4 Sus scrofa ENSSSCG00000003588 I 0.000
SRSF4 Spermophilus tridecemlineatus ENSSTOG00000015908 N 0.000
SRSF5 Tupaia belangeri ENSTBEG00000001972 I 0.000
SFRS4 Taeniopygia guttata ENSTGUG00000000765 N 0.000
SFRS6 Taeniopygia guttata ENSTGUG00000003455 I 0.000
SFRS5 Taeniopygia guttata ENSTGUG00000011425 I 0.000
XP_002200515.1 Taeniopygia guttata ENSTGUG00000011492 I 0.000
SRSF4 Tetraodon nigroviridis ENSTNIG00000000115 I 0.000
SRSF6 Tetraodon nigroviridis ENSTNIG00000001692 I 0.000
SRSF4 Tetraodon nigroviridis ENSTNIG00000005573 I 0.000
SRSF5 Tetraodon nigroviridis ENSTNIG00000016411 I 0.000
SRSF6 Takifugu rubripes ENSTRUG00000003244 I 0.000
PACS2 Takifugu rubripes ENSTRUG00000010740 I 0.000
SRSF4 Takifugu rubripes ENSTRUG00000011891 I 0.000
SRSF5 Takifugu rubripes ENSTRUG00000017811 I 0.000
SRSF5 Tarsius syrichta ENSTSYG00000007786 I 0.000
SRSF4 Tarsius syrichta ENSTSYG00000007903 I 0.000
SRSF4 Tursiops truncatus ENSTTRG00000002572 I 0.000
SRSF5 Tursiops truncatus ENSTTRG00000003318 I 0.000
SRSF5 Vicugna pacos ENSVPAG00000006448 I 0.000
srsf5 Xenopus tropicalis ENSXETG00000002211 I 0.000
srsf4 Xenopus tropicalis ENSXETG00000014380 I 0.000
XB-GENE-5954653 Xenopus tropicalis ENSXETG00000017937 I 0.000
srsf6 Xenopus tropicalis ENSXETG00000025503 I 0.000
estExt_fgenesh1_pg.C_3000025 Capitella teleta estExt_fgenesh1_pg.C_3000025 I 0.000
estExt_fgenesh2_pg.C_920027 Branchiostoma floridae estExt_fgenesh2_pg.C_920027 I 0.000
estExt_fgenesh2_pm.C_690014 Branchiostoma floridae estExt_fgenesh2_pm.C_690014 I 0.000
estExt_Genewise1Plus.C_150169 Daphnia pulex estExt_Genewise1Plus.C_150169 I 0.000
estExt_Genewise1Plus.C_1640045 Capitella teleta estExt_Genewise1Plus.C_1640045 I 0.000
estExt_Genewise1Plus.C_sca_890186 Lottia gigantea estExt_Genewise1Plus.C_sca_890186 I 0.000
e_gw1.89.27.1 Lottia gigantea e_gw1.89.27.1 I 0.000
B52 Drosophila melanogaster FBgn0004587 D 0.000
GA10599-RA Drosophila pseudoobscura FBgn0070656 I 0.000
GF17608 Drosophila ananassae FBgn0094626 I 0.000
GH18528 Drosophila grimshawi FBgn0125995 I 0.000
GI22065 Drosophila mojavensis FBgn0144794 I 0.000
GL23543 Drosophila persimilis FBgn0161133 I 0.000
GJ24113 Drosophila virilis FBgn0211197 I 0.000
GK13948 Drosophila willistoni FBgn0215954 I 0.000
ISCW002531 Ixodes scapularis ISCW002531 I 0.000
ISCW010321 Ixodes scapularis ISCW010321 I 0.000
ISCW010322 Ixodes scapularis ISCW010322 I 0.000
ISCW014220 Ixodes scapularis ISCW014220 I 0.000
nasonia_NCBI_hmm368623 Nasonia vitripennis nasonia_NCBI_hmm368623 I 0.000
nasonia_NCBI_hmm370623 Nasonia vitripennis nasonia_NCBI_hmm370623 I 0.000
PHUM290500 Pediculus humanus PHUM290500 I 0.000
Ppa-rsp-1 Pristionchus pacificus PPA18140 N 0.000
XP_001180940.1 Strongylocentrotus purpuratus XP_001180940.1 I 0.000
XP_798746.1 Strongylocentrotus purpuratus XP_798746.1 I 0.000