CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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How to cite
LOC_Os03g36350
(
Oryza sativa
)
CCHC ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
IPR001878
LOC_Os03g36350
T11064_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
LOC_Os03g36350.1
CCHC ZF
209
226
GSCFNCGELGHFADKCPK
Links
Other
CCHC ZF
family RBPs
Other
Oryza sativa
RBPs
659 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
CJA06807
Caenorhabditis japonica
CJA06807
N
0.000
CJA07414
Caenorhabditis japonica
CJA07414
N
0.000
CJA16529
Caenorhabditis japonica
CJA16529
N
0.000
CJA19072
Caenorhabditis japonica
CJA19072
N
0.000
CJA21862
Caenorhabditis japonica
CJA21862
N
0.000
CJA23753
Caenorhabditis japonica
CJA23753
N
0.000
CJA24593
Caenorhabditis japonica
CJA24593
N
0.000
CJA27792
Caenorhabditis japonica
CJA27792
N
0.000