CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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LOC_Os04g25030
(
Oryza sativa
)
CCHC ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
IPR001878
LOC_Os04g25030
T11277_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
LOC_Os04g25030.1
CCHC ZF
600
617
RLCFNCFEPGHFADKCPK
Links
Other
CCHC ZF
family RBPs
Other
Oryza sativa
RBPs
599 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
AAB09041
Xenopus laevis
AAB09041
N
0.000
AAC41243
Xenopus laevis
AAC41243
N
0.000
AAH45035
Xenopus laevis
AAH45035
N
0.000
AAH57743
Xenopus laevis
AAH57743
N
0.000
AAH70706
Xenopus laevis
AAH70706
N
0.000
AAI08575
Xenopus laevis
AAI08575
N
0.000
ACH69783
Xenopus laevis
ACH69783
N
0.000
Ame_R009875
Ailuropoda melanoleuca
Ame_R009875
N
0.000
Ame_R017712
Ailuropoda melanoleuca
Ame_R017712
N
0.000
CELF1
Anolis carolinensis
ENSACAG00000002114
N
0.000
CELF2
Anolis carolinensis
ENSACAG00000007661
N
0.000
A7MB95_BOVIN
Bos taurus
ENSBTAG00000002520
N
0.000
Q2KI16_BOVIN
Bos taurus
ENSBTAG00000008937
I
0.000
CELF2
Canis familiaris
ENSCAFG00000004973
N
0.000
CELF1
Canis familiaris
ENSCAFG00000008452
N
0.000
CELF2
Choloepus hoffmanni
ENSCHOG00000002945
N
0.000
LOC100392717
Callithrix jacchus
ENSCJAG00000020133
N
0.000
LOC100391960
Callithrix jacchus
ENSCJAG00000020663
I
0.000
CELF1
Cavia porcellus
ENSCPOG00000007871
N
0.000
CELF2
Cavia porcellus
ENSCPOG00000012567
N
0.000
celf2
Danio rerio
ENSDARG00000002131
N
0.000
celf1
Danio rerio
ENSDARG00000005315
N
0.000
Celf1
Dipodomys ordii
ENSDORG00000013721
N
0.000
CELF2
Equus caballus
ENSECAG00000006649
N
0.000
CELF1
Equus caballus
ENSECAG00000007741
N
0.000
CELF2
Erinaceus europaeus
ENSEEUG00000005658
N
0.000
CELF2
Homo sapiens
ENSG00000048740
N
0.000
CELF1
Homo sapiens
ENSG00000149187
N
0.000
CELF2
Gasterosteus aculeatus
ENSGACG00000004426
N
0.000
CELF2_CHICK
Gallus gallus
ENSGALG00000006713
N
0.000
CELF1_CHICK
Gallus gallus
ENSGALG00000008097
N
0.000
CELF2
Gorilla gorilla
ENSGGOG00000009330
I
0.000
CELF1
Loxodonta africana
ENSLAFG00000003484
N
0.000
CELF2
Loxodonta africana
ENSLAFG00000013612
N
0.000
CELF1
Macropus eugenii
ENSMEUG00000007763
N
0.000
CELF1
Meleagris gallopavo
ENSMGAG00000010629
N
0.000
CELF1
Microcebus murinus
ENSMICG00000007157
N
0.000
CELF2
Microcebus murinus
ENSMICG00000007867
N
0.000
CELF2
Macaca mulatta
ENSMMUG00000011468
N
0.000
CELF1
Macaca mulatta
ENSMMUG00000011657
N
0.000
CELF2
Monodelphis domestica
ENSMODG00000016763
N
0.000
CELF1
Monodelphis domestica
ENSMODG00000019913
N
0.000
Celf2
Mus musculus
ENSMUSG00000002107
N
0.000
Celf1
Mus musculus
ENSMUSG00000005506
N
0.000
CELF1
Ornithorhynchus anatinus
ENSOANG00000007896
N
0.000
CELF1
Oryctolagus cuniculus
ENSOCUG00000001311
N
0.000
CELF2
Oryctolagus cuniculus
ENSOCUG00000004961
N
0.000
CELF2
Otolemur garnettii
ENSOGAG00000005541
N
0.000
CELF1
Ochotona princeps
ENSOPRG00000003239
N
0.000
CELF2
Ochotona princeps
ENSOPRG00000011502
N
0.000
CELF1
Procavia capensis
ENSPCAG00000002631
N
0.000
ENSPPYG00000002083
Pongo pygmaeus
ENSPPYG00000002083
N
0.000
ENSPPYG00000003302
Pongo pygmaeus
ENSPPYG00000003302
N
0.000
CELF2
Pan troglodytes
ENSPTRG00000002284
N
0.000
Cugbp1
Rattus norvegicus
ENSRNOG00000010379
N
0.000
Cugbp2
Rattus norvegicus
ENSRNOG00000023661
N
0.000
CELF2
Tupaia belangeri
ENSTBEG00000007939
N
0.000
CUGBP2-1
Taeniopygia guttata
ENSTGUG00000002136
N
0.000
CUGBP1
Taeniopygia guttata
ENSTGUG00000010377
N
0.000
CELF2
Tetraodon nigroviridis
ENSTNIG00000007201
N
0.000
CELF2
Tetraodon nigroviridis
ENSTNIG00000016009
N
0.000
CELF1
Takifugu rubripes
ENSTRUG00000001711
N
0.000
CELF2
Takifugu rubripes
ENSTRUG00000010147
N
0.000
CELF2
Takifugu rubripes
ENSTRUG00000016905
N
0.000
CELF1
Tarsius syrichta
ENSTSYG00000003866
N
0.000
CELF2
Tarsius syrichta
ENSTSYG00000005118
N
0.000
CELF1
Tursiops truncatus
ENSTTRG00000014157
N
0.000
CELF1
Vicugna pacos
ENSVPAG00000000336
N
0.000
CELF2
Vicugna pacos
ENSVPAG00000009360
N
0.000
celf1
Xenopus tropicalis
ENSXETG00000009044
N
0.000
celf2
Xenopus tropicalis
ENSXETG00000021992
N
0.000
O57406
Xenopus laevis
O57406
N
0.000
Q6PF35
Xenopus laevis
Q6PF35
N
0.000
Q7ZXE2
Xenopus laevis
Q7ZXE2
N
0.000