CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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LOC_Os08g20350
(
Oryza sativa
)
CCHC ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
IPR001878
LOC_Os08g20350
T11968_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
LOC_Os08g20350.1
CCHC ZF
617
634
RLCFNCFEPGHFADKCPE
Links
Other
CCHC ZF
family RBPs
Other
Oryza sativa
RBPs
373 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
29647.m002009
Ricinus communis
29647.m002009
N
0.000
29726.m004014
Ricinus communis
29726.m004014
N
0.000
30128.m009030
Ricinus communis
30128.m009030
N
0.000
AT2G47850
Arabidopsis thaliana
AT2G47850-TAIR-G
N
0.000
BRADI2G09350
Brachypodium distachyon
BRADI2G09350
N
0.000
cassava12889.valid.m1
Manihot esculenta
cassava12889.valid.m1
N
0.000
cassava12890.valid.m1
Manihot esculenta
cassava12890.valid.m1
N
0.000
cassava17662.valid.m1
Manihot esculenta
cassava17662.valid.m1
N
0.000
cassava19141.valid.m1
Manihot esculenta
cassava19141.valid.m1
N
0.000
cassava24680.valid.m1
Manihot esculenta
cassava24680.valid.m1
N
0.000
cassava29576.valid.m1
Manihot esculenta
cassava29576.valid.m1
N
0.000
cassava43930.valid.m1
Manihot esculenta
cassava43930.valid.m1
N
0.000
chr1.CM1413.200.nd
Lotus japonicus
chr1.CM1413.200.nd
N
0.000
Glyma02g17250.1
Glycine max
Glyma02g17250.1
N
0.000
Glyma02g17260.1
Glycine max
Glyma02g17260.1
N
0.000
Glyma07g37980.1
Glycine max
Glyma07g37980.1
N
0.000
Glyma10g02540.1
Glycine max
Glyma10g02540.1
N
0.000
Glyma10g02550.1
Glycine max
Glyma10g02550.1
N
0.000
Glyma10g31370.1
Glycine max
Glyma10g31370.1
N
0.000
Glyma20g36140.1
Glycine max
Glyma20g36140.1
N
0.000
GRMZM2G036837
Zea mays
GRMZM2G036837
N
0.000
GRMZM2G086994
Zea mays
GRMZM2G086994
N
0.000
GRMZM2G100794
Zea mays
GRMZM2G100794
N
0.000
GRMZM2G107491
Zea mays
GRMZM2G107491
N
0.000
GSVIVG00010980001
Vitis vinifera
GSVIVG00010980001
N
0.000
GSVIVG00017774001
Vitis vinifera
GSVIVG00017774001
N
0.000
gw1.102.25.1
Physcomitrella patens
gw1.102.25.1
N
0.000
LOC_Os01g15460
Oryza sativa
LOC_Os01g15460
N
0.000
LOC_Os11g28270
Oryza sativa
LOC_Os11g28270
N
0.000
MDP0000207283
Malus x domestica
MDP0000207283
N
0.000
MDP0000304584
Malus x domestica
MDP0000304584
N
0.000
MDP0000310338
Malus x domestica
MDP0000310338
N
0.000
MDP0000319251
Malus x domestica
MDP0000319251
N
0.000
MDP0000535412
Malus x domestica
MDP0000535412
N
0.000
MDP0000808281
Malus x domestica
MDP0000808281
N
0.000
Medtr8g139290
Medicago truncatula
Medtr8g139290
N
0.000
mgf001793m
Mimulus guttatus
mgf001793m
N
0.000
mgf002685m
Mimulus guttatus
mgf002685m
N
0.000
mgf004851m
Mimulus guttatus
mgf004851m
N
0.000
mgf010716m
Mimulus guttatus
mgf010716m
N
0.000
ppa005056m
Prunus persica
ppa005056m
N
0.000
ppa005229m
Prunus persica
ppa005229m
N
0.000
SB03G009930
Sorghum bicolor
Sb03g009930
N
0.000
SB05G013190
Sorghum bicolor
Sb05g013190
N
0.000
XM_002880280.1
Arabidopsis lyrata
scaffold_403761.1
N
0.000