CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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LOC_Os10g20020
(
Oryza sativa
)
CCHC ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
IPR001878
LOC_Os10g20020
T12267_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
LOC_Os10g20020.1
CCHC ZF
620
637
RLCFNCFEPGHFADKCPK
Links
Other
CCHC ZF
family RBPs
Other
Oryza sativa
RBPs
599 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
estExt_fgenesh3_pg.C_320041
Postia placenta
estExt_fgenesh3_pg.C_320041
N
0.000
nasonia_NCBI_hmm18164
Nasonia vitripennis
nasonia_NCBI_hmm18164
N
0.000
nasonia_NCBI_hmm234754
Nasonia vitripennis
nasonia_NCBI_hmm234754
N
0.000
nasonia_NCBI_hmm259264
Nasonia vitripennis
nasonia_NCBI_hmm259264
N
0.000
nasonia_NCBI_hmm32514
Nasonia vitripennis
nasonia_NCBI_hmm32514
N
0.000
nasonia_NCBI_hmm35024
Nasonia vitripennis
nasonia_NCBI_hmm35024
N
0.000
nasonia_NCBI_hmm38614
Nasonia vitripennis
nasonia_NCBI_hmm38614
N
0.000
nasonia_NCBI_hmm412904
Nasonia vitripennis
nasonia_NCBI_hmm412904
N
0.000
nasonia_NCBI_hmm54844
Nasonia vitripennis
nasonia_NCBI_hmm54844
N
0.000