CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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How to cite
Sb04g021900
(
Sorghum bicolor
)
CCHC ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
IPR001878
Sb04g021900
T12850_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
Sb04g021900.1
CCHC ZF
202
219
PTCYSCGVAGHIARNCPR
Sb04g021900.2
CCHC ZF
202
219
PTCYSCGVAGHIARNCPR
Links
Other
CCHC ZF
family RBPs
Other
Sorghum bicolor
RBPs
5 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Genemark.10729_g
Serpula lacrymans
Genemark.10729_g
N
0.722
Genemark.4174_g
Serpula lacrymans
Genemark.4174_g
N
0.722
Genemark.8306_g
Serpula lacrymans
Genemark.8306_g
N
0.722
mgf021210m
Mimulus guttatus
mgf021210m
N
0.778