CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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Genemark.9654_g
(
Serpula lacrymans
)
CCHC ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
IPR001878
Genemark.9654_g
T15810_0.6
Superfamily (2011-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
Genemark.9654_g
CCHC ZF
276
293
GSCYSCGKEGHMSRDCRN
Links
Other
CCHC ZF
family RBPs
Other
Serpula lacrymans
RBPs
41 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
CHGG_07888
Chaetomium globosum
CHGG_07888
N
0.000
estExt_fgenesh2_kg.C_60127
Thielavia terrestris
estExt_fgenesh2_kg.C_60127
N
0.000
estExt_fgenesh3_kg.C_110041
Neurospora discreta
estExt_fgenesh3_kg.C_110041
N
0.000
estExt_Genewise1Plus.C_130242
Neurospora tetrasperma
estExt_Genewise1Plus.C_130242
N
0.000
fgenesh5_pg.C_scaffold_21000102
Trichoderma reesei
fgenesh5_pg.C_scaffold_21000102
N
0.000
FGSG_10830
Fusarium graminearum
FGSG_10830
N
0.000
FVEG_11504
Fusarium verticillioides
FVEG_11504
N
0.000
GLRG_05141
Colletotrichum graminicola
GLRG_05141
N
0.000
MGG_06668
Magnaporthe oryzae
MGG_06668
N
0.000
NCU01793
Neurospora crassa
NCU01793
N
0.000
Pa_3_8710
Podospora anserina
Pa_3_8710
N
0.000
VDAG_08864
Verticillium dahliae
VDAG_08864
N
0.000
VDBG_05239
Verticillium albo atrum
VDBG_05239
N
0.000