CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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BICC1
(
Canis familiaris
)
KH,SAM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00013 (KH_1)
PF00536 (SAM_1)
IPR018111
IPR021129
ENSCAFG00000012331
T22473_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSCAFP00000018180
KH
1
20
DPHIKVSGKKEDVKEAKEMI
ENSCAFP00000018180
KH
32
97
TLKMDVSHTEHSHVIGKGGNNIKKVMEETGCHIHFPDSNRNNQAEKSNQVSIAGQPAGVESARVRI
ENSCAFP00000018180
KH
124
166
PSIQHISQTYNISVSFKQRSRMYGATVIVRGSQNNTSAVKEGT
ENSCAFP00000018180
KH
184
246
STQLDIAAQHHLFMMGRNGSNIKHIMQRTGAQIHFPDPSNPQKKSTVYLQGTIESVCLARQYL
ENSCAFP00000018180
SAM
772
832
KGSDLPELFSKLGLGKYTDVFQQQEIDLQTFLTLTDQDLKELGITTFGARRKMLLAISELN
ENSCAFP00000018185
KH
1
20
DPHIKVSGKKEDVKEAKEMI
ENSCAFP00000018185
KH
32
97
TLKMDVSHTEHSHVIGKGGNNIKKVMEETGCHIHFPDSNRNNQAEKSNQVSIAGQPAGVESARVRI
ENSCAFP00000018185
KH
124
166
PSIQHISQTYNISVSFKQRSRMYGATVIVRGSQNNTSAVKEGT
ENSCAFP00000018185
KH
184
246
STQLDIAAQHHLFMMGRNGSNIKHIMQRTGAQIHFPDPSNPQKKSTVYLQGTIESVCLARQYL
ENSCAFP00000018185
SAM
772
831
KGSDLPELFSKLGLGKYTDVFQQQEIDLQTFLTLTDQDLKELGITTFGARRKMLLAISVC
Links
Other
KH,SAM
family RBPs
Other
Canis familiaris
RBPs
31 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
znfl1
Danio rerio
ENSDARG00000037914
N
0.000
CR759902.3
Danio rerio
ENSDARG00000074024
N
0.000
ENSDARG00000074124
Danio rerio
ENSDARG00000074124
N
0.000
znfl1
Danio rerio
ENSDARG00000074359
N
0.000
CR318674.1
Danio rerio
ENSDARG00000074668
N
0.000
ENSDARG00000075185
Danio rerio
ENSDARG00000075185
N
0.000
znfl1
Danio rerio
ENSDARG00000075291
N
0.000
znfl1
Danio rerio
ENSDARG00000075996
N
0.000
ENSDARG00000076378
Danio rerio
ENSDARG00000076378
N
0.000
BX004876.2
Danio rerio
ENSDARG00000077719
N
0.000
znfl1
Danio rerio
ENSDARG00000079036
N
0.000
znfl1
Danio rerio
ENSDARG00000079126
N
0.000
si:ch211-168h21.3
Danio rerio
ENSDARG00000079524
N
0.000
ENSDARG00000079963
Danio rerio
ENSDARG00000079963
N
0.000