CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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LARP7
(
Tarsius syrichta
)
La,RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF05383 (La)
PF00076 (RRM_1)
IPR006630
IPR000504
ENSTSYG00000006769
T23447_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSTSYP00000006215
La
37
96
IAKQVDFWFGDANLHKDRFLREQIEKSRDGYVDISLLVSFNKMKKLTTDGKLIARALKSS
ENSTSYP00000006215
RRM
126
189
VYVELLPKNVNHSWIERVFGKCGNVVYISIPHYKSTGDPKGFAFVEFETKEQAAKAIEFLNNPP
Links
Other
La,RRM
family RBPs
Other
Tarsius syrichta
RBPs
26 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
BGIOSIBCE006465
Oryza indica
BGIOSIBCE006465
N
0.000
BRADI1G41430
Brachypodium distachyon
BRADI1G41430
N
0.000
estExt_fgenesh1_pg.C_690026
Physcomitrella patens
estExt_fgenesh1_pg.C_690026
N
0.000
Glyma07g09280.1
Glycine max
Glyma07g09280.1
N
0.000
Glyma09g32500.1
Glycine max
Glyma09g32500.1
N
0.000
GRMZM2G111907
Zea mays
GRMZM2G111907
N
0.000
GSVIVG00015362001
Vitis vinifera
GSVIVG00015362001
N
0.000
LOC_Os02g17470
Oryza sativa
LOC_Os02g17470
N
0.000
LOC_Os06g22700
Oryza sativa
LOC_Os06g22700
N
0.000
MDP0000462264
Malus x domestica
MDP0000462264
N
0.000
PDK_20s13009459g001
Phoenix dactylifera
PDK_20s13009459g001
N
0.000
ppa007541m
Prunus persica
ppa007541m
N
0.000