CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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gw1.4.569.1
(
Trichoplax adhaerens
)
RanBP ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00641 (zf-RanBP)
IPR001876
gw1.4.569.1
T27582_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
gw1.4.569.1
RanBP ZF
9
37
SEDSYWDCTVCTYRNITTAFKCLMCDVRK
Links
Other
RanBP ZF
family RBPs
Other
Trichoplax adhaerens
RBPs
11 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
AGAP010288
Anopheles gambiae
AGAP010288
N
0.724
amel4_ncbi_hmm6926
Apis mellifera
amel4_ncbi_hmm6926
N
0.759
amel4_ncbi_hmm6926
Tribolium castaneum
amel4_ncbi_hmm6926
N
0.759
estExt_fgenesh1_pg.C_1000062
Nematostella vectensis
estExt_fgenesh1_pg.C_1000062
N
0.759
GA11466-RA
Drosophila pseudoobscura
FBgn0071517
N
0.724
GL11369
Drosophila persimilis
FBgn0148978
N
0.724
fgenesh1_pg.C_scaffold_97000016
Daphnia pulex
fgenesh1_pg.C_scaffold_97000016
N
0.724
ISCW017896
Ixodes scapularis
ISCW017896
N
0.759
nasonia_NCBI_hmm137104
Nasonia vitripennis
nasonia_NCBI_hmm137104
N
0.793
XP_001183014.1
Strongylocentrotus purpuratus
XP_001183014.1
N
0.700
XP_001186443.1
Strongylocentrotus purpuratus
XP_001186443.1
N
0.700