ENSCAFG00000017448 (Canis familiaris)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSCAFG00000017448 T35159_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
HNRNPA1
M312_0.6 		Homo sapiens Sequence logo not available UAGGGW RIP-chip
Cook et al.(2011)
560_17925491 		0.727
HNRNPA1
M271_0.6 		Homo sapiens UAGGGW SELEX
Cook et al.(2011)
23_7510636 		0.727
HNRNPA1
M022_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00022 		0.727
HNRNPA1L2
M023_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00023 		0.706
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCAFP00000025712 RRM 16 85
ENSCAFP00000025712 RRM 107 175

Links

Other RRM family RBPs
Other Canis familiaris RBPs

58 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
LOC100395568 Callithrix jacchus ENSCJAG00000033666 N 0.000
RP11-1286E23.4 Homo sapiens ENSG00000229924 N 0.000
ENSOCUG00000021017 Oryctolagus cuniculus ENSOCUG00000021017 N 0.000
ENSOCUG00000023886 Oryctolagus cuniculus ENSOCUG00000023886 N 0.000
ENSOCUG00000025650 Oryctolagus cuniculus ENSOCUG00000025650 N 0.000
ENSOPRG00000018641 Ochotona princeps ENSOPRG00000018641 N 0.000
ENSOPRG00000018667 Ochotona princeps ENSOPRG00000018667 N 0.000
ENSOPRG00000019113 Ochotona princeps ENSOPRG00000019113 N 0.000
ENSPVAG00000010090 Pteropus vampyrus ENSPVAG00000010090 N 0.000