ENSCAFG00000017448 (Canis familiaris)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSCAFG00000017448 T35159_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
HNRNPA1
M312_0.6 		Homo sapiens Sequence logo not available UAGGGW RIP-chip
Cook et al.(2011)
560_17925491 		0.727
HNRNPA1
M271_0.6 		Homo sapiens UAGGGW SELEX
Cook et al.(2011)
23_7510636 		0.727
HNRNPA1
M022_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00022 		0.727
HNRNPA1L2
M023_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00023 		0.706
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCAFP00000025712 RRM 16 85
ENSCAFP00000025712 RRM 107 175

Links

Other RRM family RBPs
Other Canis familiaris RBPs

58 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Ame_R011792 Ailuropoda melanoleuca Ame_R011792 I 0.717
ENSACAG00000007169 Anolis carolinensis ENSACAG00000007169 I 0.703
ROA1_BOVIN Bos taurus ENSBTAG00000001553 I 0.717
XM_844664.1 Canis familiaris ENSCAFG00000000687 I 0.704
ENSCAFG00000006036 Canis familiaris ENSCAFG00000006036 I 0.700
XM_534786.2 Canis familiaris ENSCAFG00000006580 I 0.717
ENSCAFG00000010153 Canis familiaris ENSCAFG00000010153 I 0.703
ENSCAFG00000014691 Canis familiaris ENSCAFG00000014691 I 0.707
ENSCAFG00000017316 Canis familiaris ENSCAFG00000017316 I 0.704
LOC100409067 Callithrix jacchus ENSCJAG00000003245 I 0.703
LOC100397230 Callithrix jacchus ENSCJAG00000004031 I 0.710
LOC100413454 Callithrix jacchus ENSCJAG00000009030 I 0.703
LOC100397230 Callithrix jacchus ENSCJAG00000018864 I 0.717
ENSCJAG00000019479 Callithrix jacchus ENSCJAG00000019479 I 0.717
ENSCJAG00000033856 Callithrix jacchus ENSCJAG00000033856 I 0.717
ENSCPOG00000021077 Cavia porcellus ENSCPOG00000021077 I 0.710
ENSDNOG00000009228 Dasypus novemcinctus ENSDNOG00000009228 I 0.717
Q6DTK6_HORSE Equus caballus ENSECAG00000008676 I 0.717
ENSEEUG00000006130 Erinaceus europaeus ENSEEUG00000006130 I 0.710
ENSFCAG00000010150 Felis catus ENSFCAG00000010150 I 0.717
HNRNPA1 Homo sapiens ENSG00000135486 D 0.717
ENSG00000215492 Homo sapiens ENSG00000215492 I 0.717
HNRNPA1 Gorilla gorilla ENSGGOG00000003040 I 0.717
ENSGGOG00000025381 Gorilla gorilla ENSGGOG00000025381 I 0.717
ENSLAFG00000026657 Loxodonta africana ENSLAFG00000026657 I 0.703
ENSLAFG00000029587 Loxodonta africana ENSLAFG00000029587 I 0.710
ENSMLUG00000000648 Myotis lucifugus ENSMLUG00000000648 I 0.717
ENSMLUG00000003232 Myotis lucifugus ENSMLUG00000003232 I 0.703
LOC710473 Macaca mulatta ENSMMUG00000007887 I 0.717
LOC710473 Macaca mulatta ENSMMUG00000007928 I 0.710
XR_011984.1 Macaca mulatta ENSMMUG00000011640 I 0.721
LOC710473 Macaca mulatta ENSMMUG00000012989 I 0.717
ENSMMUG00000022448 Macaca mulatta ENSMMUG00000022448 I 0.702
LOC710473 Macaca mulatta ENSMMUG00000029402 I 0.710
ROA1_MACMU Macaca mulatta ENSMMUG00000031613 I 0.703
XM_001106745.1 Macaca mulatta ENSMMUG00000031809 I 0.708
Hnrnpa1 Mus musculus ENSMUSG00000046434 I 0.717
ENSOCUG00000010985 Oryctolagus cuniculus ENSOCUG00000010985 I 0.710
ENSOCUG00000013350 Oryctolagus cuniculus ENSOCUG00000013350 I 0.717
ENSOCUG00000021007 Oryctolagus cuniculus ENSOCUG00000021007 I 0.724
ENSOCUG00000022568 Oryctolagus cuniculus ENSOCUG00000022568 I 0.710
ENSOCUG00000022668 Oryctolagus cuniculus ENSOCUG00000022668 I 0.703
ENSOCUG00000023322 Oryctolagus cuniculus ENSOCUG00000023322 I 0.703
ENSOCUG00000023444 Oryctolagus cuniculus ENSOCUG00000023444 I 0.710
ENSOCUG00000023674 Oryctolagus cuniculus ENSOCUG00000023674 I 0.717
ENSOCUG00000028124 Oryctolagus cuniculus ENSOCUG00000028124 I 0.717
ENSOGAG00000009945 Otolemur garnettii ENSOGAG00000009945 I 0.710
ENSOPRG00000006107 Ochotona princeps ENSOPRG00000006107 I 0.710
ENSPPYG00000017853 Pongo pygmaeus ENSPPYG00000017853 I 0.703
ROA1_PANTR Pan troglodytes ENSPTRG00000005035 I 0.717
ROA1_PANTR Pan troglodytes ENSPTRG00000028756 I 0.717
ROA1_PANTR Pan troglodytes ENSPTRG00000031363 I 0.717
HNRNPA1L2 Pan troglodytes ENSPTRG00000032520 I 0.717
ENSPVAG00000000322 Pteropus vampyrus ENSPVAG00000000322 I 0.717
Hnrnpa1 Rattus norvegicus ENSRNOG00000036839 I 0.717
ENSSSCG00000000288 Sus scrofa ENSSSCG00000000288 I 0.717
ENSTBEG00000008238 Tupaia belangeri ENSTBEG00000008238 I 0.717
ENSTTRG00000004505 Tursiops truncatus ENSTTRG00000004505 I 0.717