ENSCJAG00000001353 (Callithrix jacchus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSCJAG00000001353 T35466_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
HNRNPA1
M312_0.6 		Homo sapiens Sequence logo not available UAGGGW RIP-chip
Cook et al.(2011)
560_17925491 		0.936
HNRNPA1
M271_0.6 		Homo sapiens UAGGGW SELEX
Cook et al.(2011)
23_7510636 		0.936
HNRNPA1
M022_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00022 		0.936
HNRNPA1L2
M023_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00023 		0.915
HNRNPA2B1
M024_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00024 		0.773
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCJAP00000002389 RRM 16 84
ENSCJAP00000002389 RRM 106 175

Links

Other RRM family RBPs
Other Callithrix jacchus RBPs

317 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Ame_R004137 Ailuropoda melanoleuca Ame_R004137 N 0.000
ENSCAFG00000018581 Canis familiaris ENSCAFG00000018581 N 0.000
ENSMEUG00000008083 Macropus eugenii ENSMEUG00000008083 N 0.000
ENSMICG00000010912 Microcebus murinus ENSMICG00000010912 N 0.000
HNRNPA3 Macaca mulatta ENSMMUG00000011937 N 0.000
ENSOCUG00000023444 Oryctolagus cuniculus ENSOCUG00000023444 I 0.908
ENSPPYG00000018709 Pongo pygmaeus ENSPPYG00000018709 N 0.000
ENSPTRG00000019356 Pan troglodytes ENSPTRG00000019356 N 0.000
HNRNPA2B1 Sorex araneus ENSSARG00000007984 N 0.000
ENSTBEG00000002499 Tupaia belangeri ENSTBEG00000002499 N 0.000