CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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LOC100391823
(
Callithrix jacchus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSCJAG00000004065
T35499_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSCJAP00000007378
RRM
167
201
EKPSEEVLVKVFARFGEIRNVDIPMLDPYREEMTG
ENSCJAP00000007378
RRM
203
242
NFHTFSFGGHLNFEAYVQYREYAGFIQAMSALRGMKLMYK
Links
Other
RRM
family RBPs
Other
Callithrix jacchus
RBPs
5 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
AKAP17A
Anolis carolinensis
ENSACAG00000005956
N
0.893
SFRS17A
Gallus gallus
ENSGALG00000016686
N
0.893
AKAP17A
Meleagris gallopavo
ENSMGAG00000014740
N
0.893
XM_001362178.1
Monodelphis domestica
ENSMODG00000000082
N
0.893
SFRS17A
Taeniopygia guttata
ENSTGUG00000010729
N
0.907