CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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RBMXL3
(
Gorilla gorilla
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSGGOG00000027260
T37946_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
RBMX
M344_0.6
Homo sapiens
CCM
SELEX
Cook et al.(2011)
922_19282290
0.803
RBMY1A1
M247_0.6
Homo sapiens
CWCAA
SELEX
Cook et al.(2011)
1053_17318228
0.704
RBMY1A1
M246_0.6
Homo sapiens
CWCAA
SELEX
Cook et al.(2011)
1052_17318228
0.704
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSGGOP00000022845
RRM
10
80
LFVGGLNLKTDEKALKAEFGKYGHIIKVFLMKDRKTNKSRGFAFVTFESPADAKAAARDMNGKYLDGKAIM
Links
Other
RRM
family RBPs
Other
Gorilla gorilla
RBPs
72 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action