SRSF4 (Oryzias latipes)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSORLG00000009430 T40169_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
B52
M334_0.6 		Drosophila melanogaster GRUCAACCNGGCGACMG SELEX
Cook et al.(2011)
802_9111335 		0.752
B52
M126_0.6 		Drosophila melanogaster GGASGRV RNAcompete
Ray et al.(2013)
RNCMPT00134 		0.752
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSORLP00000011819 RRM 4 66
ENSORLP00000011819 RRM 106 171
ENSORLP00000011823 RRM 4 66
ENSORLP00000011823 RRM 106 171

Links

Other RRM family RBPs
Other Oryzias latipes RBPs

143 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
LOC_Os04g03110 Oryza sativa LOC_Os04g03110 N 0.000
LOC_Os05g17150 Oryza sativa LOC_Os05g17150 N 0.000
LOC_Os06g32820 Oryza sativa LOC_Os06g32820 N 0.000
LOC_Os10g09490 Oryza sativa LOC_Os10g09490 N 0.000
LOC_Os11g22910 Oryza sativa LOC_Os11g22910 N 0.000
LOC_Os12g25220 Oryza sativa LOC_Os12g25220 N 0.000