CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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SRSF4
(
Oryzias latipes
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSORLG00000009430
T40169_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
B52
M334_0.6
Drosophila melanogaster
GRUCAACCNGGCGACMG
SELEX
Cook et al.(2011)
802_9111335
0.752
B52
M126_0.6
Drosophila melanogaster
GGASGRV
RNAcompete
Ray et al.(2013)
RNCMPT00134
0.752
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSORLP00000011819
RRM
4
66
VYIGRLSYRAREKDVERFFKGYGKILEVDLKNGYGFVEFDDPRDADDAVYDLNGKELCGERVI
ENSORLP00000011819
RRM
106
171
LIVENLSSRCSWQDLKDYMRQAGEVTYADTHKGRRNEGVIEFRQYSDMKRALEKLDGTEVNGRKIR
ENSORLP00000011823
RRM
4
66
VYIGRLSYRAREKDVERFFKGYGKILEVDLKNGYGFVEFDDPRDADDAVYDLNGKELCGERVI
ENSORLP00000011823
RRM
106
171
LIVENLSSRCSWQDLKDYMRQAGEVTYADTHKGRRNEGVIEFRQYSDMKRALEKLDGTEVNGRKIR
Links
Other
RRM
family RBPs
Other
Oryzias latipes
RBPs
143 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
LOC_Os04g03110
Oryza sativa
LOC_Os04g03110
N
0.000
LOC_Os05g17150
Oryza sativa
LOC_Os05g17150
N
0.000
LOC_Os06g32820
Oryza sativa
LOC_Os06g32820
N
0.000
LOC_Os10g09490
Oryza sativa
LOC_Os10g09490
N
0.000
LOC_Os11g22910
Oryza sativa
LOC_Os11g22910
N
0.000
LOC_Os12g25220
Oryza sativa
LOC_Os12g25220
N
0.000