SRSF4 (Oryzias latipes)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSORLG00000009430 T40169_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
B52
M334_0.6 		Drosophila melanogaster GRUCAACCNGGCGACMG SELEX
Cook et al.(2011)
802_9111335 		0.752
B52
M126_0.6 		Drosophila melanogaster GGASGRV RNAcompete
Ray et al.(2013)
RNCMPT00134 		0.752
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSORLP00000011819 RRM 4 66
ENSORLP00000011819 RRM 106 171
ENSORLP00000011823 RRM 4 66
ENSORLP00000011823 RRM 106 171

Links

Other RRM family RBPs
Other Oryzias latipes RBPs

143 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
62194 Helobdella robusta 62194 I 0.721
AAH44085 Xenopus laevis AAH44085 I 0.729
AAH44265 Xenopus laevis AAH44265 I 0.822
AAH46668 Xenopus laevis AAH46668 I 0.837
AAH71160 Xenopus laevis AAH71160 I 0.744
AGAP004592 Anopheles gambiae AGAP004592 I 0.736
amel4_ncbi_hmm6583 Apis mellifera amel4_ncbi_hmm6583 I 0.744
Ame_R004936 Ailuropoda melanoleuca Ame_R004936 I 0.736
Ame_R018370 Ailuropoda melanoleuca Ame_R018370 I 0.930
BGIBMGA010178 Bombyx mori BGIBMGA010178 I 0.729
CPIJ008634 Culex quinquefasciatus CPIJ008634 I 0.752
CpipJ_CPIJ008634 Culex pipiens CpipJ_CPIJ008634 I 0.752
DGIL_AUG5s17730g6t1 Acyrtosiphon pisum DGIL_AUG5s17730g6t1 I 0.713
SRSF6 Anolis carolinensis ENSACAG00000002061 I 0.853
ENSACAG00000004096 Anolis carolinensis ENSACAG00000004096 N 0.721
SRSF5 Anolis carolinensis ENSACAG00000005143 I 0.744
ENSACAG00000005544 Anolis carolinensis ENSACAG00000005544 I 0.713
SFRS6_BOVIN Bos taurus ENSBTAG00000008527 I 0.853
A6H7B7_BOVIN Bos taurus ENSBTAG00000011596 I 0.736
A7MB38_BOVIN Bos taurus ENSBTAG00000013309 I 0.930
SRSF5 Canis familiaris ENSCAFG00000016589 I 0.736
ENSCING00000004873 Ciona intestinalis ENSCING00000004873 I 0.760
ENSCING00000011362 Ciona intestinalis ENSCING00000011362 N 0.729
ENSCING00000012370 Ciona intestinalis ENSCING00000012370 I 0.760
LOC100402973 Callithrix jacchus ENSCJAG00000009971 I 0.930
ENSCJAG00000010895 Callithrix jacchus ENSCJAG00000010895 N 0.860
A6MLI3_CALJA Callithrix jacchus ENSCJAG00000014884 I 0.736
SRSF6 Callithrix jacchus ENSCJAG00000017888 I 0.860
ENSCJAG00000031736 Callithrix jacchus ENSCJAG00000031736 N 0.860
SRSF5 Cavia porcellus ENSCPOG00000005949 I 0.736
SRSF4 Cavia porcellus ENSCPOG00000007263 I 0.930
SRSF6 Cavia porcellus ENSCPOG00000011761 I 0.814
ENSCSAVG00000002581 Ciona savignyi ENSCSAVG00000002581 I 0.744
srsf6a Danio rerio ENSDARG00000013729 I 0.860
srsf6b Danio rerio ENSDARG00000016783 I 0.829
srsf5b Danio rerio ENSDARG00000027734 I 0.736
srsf5a Danio rerio ENSDARG00000029818 I 0.721
SRSF4 Dasypus novemcinctus ENSDNOG00000000968 I 0.930
SRSF6 Dasypus novemcinctus ENSDNOG00000008410 I 0.860
Srsf6 Dipodomys ordii ENSDORG00000001945 I 0.860
Srsf4 Dipodomys ordii ENSDORG00000002459 I 0.922
LOC100053264 Equus caballus ENSECAG00000026873 I 0.736
SRSF4 Erinaceus europaeus ENSEEUG00000008479 I 0.930
SRSF6 Echinops telfairi ENSETEG00000006221 I 0.845
SRSF4 Echinops telfairi ENSETEG00000009774 N 0.721
SRSF5 Echinops telfairi ENSETEG00000020396 I 0.736
SRSF5 Felis catus ENSFCAG00000008848 I 0.736
SRSF5 Homo sapiens ENSG00000100650 D 0.736
SRSF4 Homo sapiens ENSG00000116350 I 0.930
SRSF6 Homo sapiens ENSG00000124193 I 0.860
SRSF4 Gasterosteus aculeatus ENSGACG00000002389 I 0.992
SRSF6 Gasterosteus aculeatus ENSGACG00000006084 I 0.829
ENSGACG00000011761 Gasterosteus aculeatus ENSGACG00000011761 I 0.721
SFRS4 Gallus gallus ENSGALG00000001411 N 0.736
Q5ZLF9_CHICK Gallus gallus ENSGALG00000009421 I 0.729
Q5ZKT4_CHICK Gallus gallus ENSGALG00000009484 I 0.736
SRSF4 Gorilla gorilla ENSGGOG00000002444 N 0.806
SRSF6 Gorilla gorilla ENSGGOG00000009808 I 0.860
SRSF5 Gorilla gorilla ENSGGOG00000016462 I 0.736
SRSF4 Loxodonta africana ENSLAFG00000002575 I 0.930
SRSF5 Loxodonta africana ENSLAFG00000005260 I 0.736
SRSF6 Macropus eugenii ENSMEUG00000014615 I 0.853
SRSF4 Meleagris gallopavo ENSMGAG00000002400 I 0.930
ENSMGAG00000011888 Meleagris gallopavo ENSMGAG00000011888 I 0.736
SRSF6 Microcebus murinus ENSMICG00000008537 I 0.853
SRSF5 Myotis lucifugus ENSMLUG00000011939 I 0.736
SRSF4 Myotis lucifugus ENSMLUG00000014770 I 0.884
SRSF4 Macaca mulatta ENSMMUG00000007110 I 0.930
SRSF5 Macaca mulatta ENSMMUG00000022407 I 0.736
SRSF6 Monodelphis domestica ENSMODG00000003107 I 0.853
SRSF4 Monodelphis domestica ENSMODG00000011052 I 0.930
SRSF5 Monodelphis domestica ENSMODG00000011362 I 0.744
Srsf6 Mus musculus ENSMUSG00000016921 I 0.845
Srsf5 Mus musculus ENSMUSG00000021134 I 0.736
Srsf4 Mus musculus ENSMUSG00000028911 I 0.930
SRSF5 Ornithorhynchus anatinus ENSOANG00000013336 I 0.713
SRSF4 Oryctolagus cuniculus ENSOCUG00000001837 I 0.930
SRSF5 Oryctolagus cuniculus ENSOCUG00000009274 I 0.736
SRSF5 Otolemur garnettii ENSOGAG00000015122 I 0.736
SRSF5 Ochotona princeps ENSOPRG00000008286 I 0.736
SRSF4 Ochotona princeps ENSOPRG00000010098 I 0.922
SRSF6 Oryzias latipes ENSORLG00000003530 I 0.853
SRSF5 Oryzias latipes ENSORLG00000009268 I 0.721
SRSF4 Procavia capensis ENSPCAG00000009879 I 0.930
SRSF6 Procavia capensis ENSPCAG00000010954 I 0.853
ENSPPYG00000001629 Pongo pygmaeus ENSPPYG00000001629 I 0.930
ENSPPYG00000005945 Pongo pygmaeus ENSPPYG00000005945 I 0.736
ENSPPYG00000011019 Pongo pygmaeus ENSPPYG00000011019 I 0.860
SRSF4 Pan troglodytes ENSPTRG00000000445 I 0.930
SRSF5 Pan troglodytes ENSPTRG00000006488 I 0.736
SRSF6 Pteropus vampyrus ENSPVAG00000015232 I 0.845
Sfrs5 Rattus norvegicus ENSRNOG00000005513 I 0.736
Sfrs6 Rattus norvegicus ENSRNOG00000006380 I 0.845
Sfrs4 Rattus norvegicus ENSRNOG00000010007 I 0.930
SRSF5 Sus scrofa ENSSSCG00000002312 I 0.736
SRSF4 Sus scrofa ENSSSCG00000003588 I 0.930
SRSF5 Tupaia belangeri ENSTBEG00000001972 I 0.705
SFRS6 Taeniopygia guttata ENSTGUG00000003455 I 0.860
SFRS5 Taeniopygia guttata ENSTGUG00000011425 I 0.744
XP_002200515.1 Taeniopygia guttata ENSTGUG00000011492 I 0.744
SRSF4 Tetraodon nigroviridis ENSTNIG00000000115 I 0.984
SRSF6 Tetraodon nigroviridis ENSTNIG00000001692 I 0.837
SRSF4 Tetraodon nigroviridis ENSTNIG00000005573 I 0.984
SRSF5 Tetraodon nigroviridis ENSTNIG00000016411 I 0.752
SRSF6 Takifugu rubripes ENSTRUG00000003244 I 0.837
PACS2 Takifugu rubripes ENSTRUG00000010740 I 0.721
SRSF4 Takifugu rubripes ENSTRUG00000011891 I 0.984
SRSF5 Takifugu rubripes ENSTRUG00000017811 I 0.752
SRSF5 Tarsius syrichta ENSTSYG00000007786 I 0.736
SRSF4 Tarsius syrichta ENSTSYG00000007903 I 0.922
SRSF4 Tursiops truncatus ENSTTRG00000002572 I 0.930
SRSF5 Tursiops truncatus ENSTTRG00000003318 I 0.736
SRSF5 Vicugna pacos ENSVPAG00000006448 I 0.736
srsf5 Xenopus tropicalis ENSXETG00000002211 I 0.752
srsf4 Xenopus tropicalis ENSXETG00000014380 I 0.837
XB-GENE-5954653 Xenopus tropicalis ENSXETG00000017937 I 0.736
srsf6 Xenopus tropicalis ENSXETG00000025503 I 0.853
estExt_fgenesh1_pg.C_3000025 Capitella teleta estExt_fgenesh1_pg.C_3000025 I 0.721
estExt_fgenesh2_pg.C_920027 Branchiostoma floridae estExt_fgenesh2_pg.C_920027 I 0.760
estExt_fgenesh2_pm.C_690014 Branchiostoma floridae estExt_fgenesh2_pm.C_690014 I 0.822
estExt_Genewise1Plus.C_150169 Daphnia pulex estExt_Genewise1Plus.C_150169 I 0.767
estExt_Genewise1Plus.C_1640045 Capitella teleta estExt_Genewise1Plus.C_1640045 I 0.760
estExt_Genewise1Plus.C_sca_890186 Lottia gigantea estExt_Genewise1Plus.C_sca_890186 I 0.713
e_gw1.89.27.1 Lottia gigantea e_gw1.89.27.1 I 0.736
B52 Drosophila melanogaster FBgn0004587 D 0.752
GA10599-RA Drosophila pseudoobscura FBgn0070656 I 0.744
GF17608 Drosophila ananassae FBgn0094626 I 0.752
GH18528 Drosophila grimshawi FBgn0125995 I 0.744
GI22065 Drosophila mojavensis FBgn0144794 I 0.744
GL23543 Drosophila persimilis FBgn0161133 I 0.744
GJ24113 Drosophila virilis FBgn0211197 I 0.744
GK13948 Drosophila willistoni FBgn0215954 I 0.752
ISCW002531 Ixodes scapularis ISCW002531 I 0.713
ISCW010321 Ixodes scapularis ISCW010321 I 0.752
ISCW010322 Ixodes scapularis ISCW010322 I 0.721
ISCW014220 Ixodes scapularis ISCW014220 I 0.729
nasonia_NCBI_hmm368623 Nasonia vitripennis nasonia_NCBI_hmm368623 I 0.736
nasonia_NCBI_hmm370623 Nasonia vitripennis nasonia_NCBI_hmm370623 I 0.736
PHUM290500 Pediculus humanus PHUM290500 I 0.752
Ppa-rsp-1 Pristionchus pacificus PPA18140 N 0.729
XP_001180940.1 Strongylocentrotus purpuratus XP_001180940.1 I 0.760
XP_798746.1 Strongylocentrotus purpuratus XP_798746.1 I 0.760