CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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RBM12B
(
Sorex araneus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSSARG00000011845
T41360_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSSARP00000010691
RRM
18
70
DIRRFFTGLTIPDGGVHIIGGDMGEAFIIFATDEDARRAVSRSGGFIMDSSVE
ENSSARP00000010691
RRM
156
223
LFLRGLPYLVNEEDVRVFFAGLWVDGVIFLKHHDGRNNGDAIVKFASCIDASGGLKCHRSFMGSRFIE
ENSSARP00000010691
RRM
285
353
VQLKNLSLSVNKRDLKNFFRDTDLSNEQIRFLYKDERRTRNAFVVFKTLRDYNTARGLHKTVLQYRPVY
ENSSARP00000010691
RRM
402
471
IYIRNFPFDVTKIEVQKFFADFSLAEDDIYLLYDDKGVGLGEALVKFKSEEQAMKAERLNRRRFLGTEVL
Links
Other
RRM
family RBPs
Other
Sorex araneus
RBPs
7 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
RBM12B
Callithrix jacchus
ENSCJAG00000000124
N
0.831
RBM12B
Echinops telfairi
ENSETEG00000013005
N
0.834
RBM12B
Macaca mulatta
ENSMMUG00000005558
N
0.835
RBM12B
Otolemur garnettii
ENSOGAG00000002979
N
0.869
ENSPPYG00000018745
Pongo pygmaeus
ENSPPYG00000018745
N
0.835
RBM12B
Pan troglodytes
ENSPTRG00000020420
N
0.835
RBM12B
Tupaia belangeri
ENSTBEG00000000449
N
0.846