CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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HNRNPF
(
Sus scrofa
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSSSCG00000010203
T41466_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
HNRNPH2
M151_0.6
Homo sapiens
GGGAGGG
RNAcompete
Ray et al.(2013)
RNCMPT00160
0.833
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSSSCP00000010879
RRM
13
84
VKLRGLPWSCSVEDVQNFLSDCTIRDGAAGVHFIYTREGRQSGEAFVELESEDDVKMALKKDRESMGHRYIE
ENSSSCP00000010879
RRM
113
182
VRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIE
ENSSSCP00000010879
RRM
291
358
VHMRGLPYKATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHDEAVAAMSKDRANMQHRYIE
Links
Other
RRM
family RBPs
Other
Sus scrofa
RBPs
92 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
s_468740
Phytophthora sojae
s_468740
N
0.000