CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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estExt_fgenesh2_kg.C_20245
(
Neurospora tetrasperma
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
estExt_fgenesh2_kg.C_20245
T50746_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
estExt_fgenesh2_kg.C_20245
RRM
9
73
LYLGNLPRHATKADVEAHFATHGTGEITEIKLMNGFGFIEYKDAMDARDVVPAFHGSDFMGERLT
estExt_fgenesh2_kg.C_20245
RRM
107
172
QISGLPNETSWQDLKDFARQSGLDVVYSETTRNQNGEGFVEFENAADLRTAVEKLDNREFKGQRVT
Links
Other
RRM
family RBPs
Other
Neurospora tetrasperma
RBPs
33 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
MDP0000249342
Malus x domestica
MDP0000249342
N
0.000
MDP0000298133
Malus x domestica
MDP0000298133
N
0.000
MDP0000928829
Malus x domestica
MDP0000928829
N
0.000