fgenesh2_pg.scaffold_6000171 (Branchiostoma floridae)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 fgenesh2_pg.scaffold_6000171 T52273_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
HNRNPC
M025_0.6 		Homo sapiens HUUUUUK RNAcompete
Ray et al.(2013)
RNCMPT00025 		0.734
RALY
M150_0.6 		Homo sapiens UUUUUUB RNAcompete
Ray et al.(2013)
RNCMPT00159 		0.703
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_pg.scaffold_6000171 RRM 68 131

Links

Other RRM family RBPs
Other Branchiostoma floridae RBPs

85 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
3821.m00489 Tetrahymena thermophila 3821.m00489 N 0.000
83285 Helobdella robusta 83285 N 0.000
AAEL005541 Aedes aegypti AAEL005541 N 0.000
AAEL005690 Aedes aegypti AAEL005690 N 0.000
AB03196.1 Alternaria brassicicola AB03196.1 N 0.000
AGAP008136 Anopheles gambiae AGAP008136 N 0.000
amel4_ncbi_hmm11961 Apis mellifera amel4_ncbi_hmm11961 N 0.000
amel4_ncbi_hmm35613 Apis mellifera amel4_ncbi_hmm35613 N 0.000
Ame_R008665 Ailuropoda melanoleuca Ame_R008665 N 0.000
Aqu1.223583 Amphimedon queenslandica Aqu1.223583 N 0.000
ARB_04672 Arthroderma benhamiae ARB_04672 N 0.000
BC1G_10007 Botrytis cinerea BC1G_10007 N 0.000
BDBG_04009 Blastomyces dermatitidis BDBG_04009 N 0.000
BGIBMGA008977 Bombyx mori BGIBMGA008977 N 0.000
ACLA_065360 Aspergillus clavatus CADACLAG00006149 N 0.000
AFLA_071340 Aspergillus flavus CADAFLAG00008558 N 0.000
AFUA_7G02170 Aspergillus fumigatus CADAFUAG00001177 N 0.000
An12g00490 Aspergillus niger CADANGAG00009498 N 0.000
ANIA_09095 Aspergillus nidulans CADANIAG00009519 N 0.000
AO090038000594 Aspergillus oryzae CADAORAG00009343 N 0.000
ATEG_01850 Aspergillus terreus CADATEAG00001841 N 0.000
NFIA_114890 Neosartorya fischeri CADNFIAG00010434 N 0.000
CBG12494 Caenorhabditis briggsae CBG12494 N 0.000
CBN08292 Caenorhabditis brenneri CBN08292 N 0.000
CHGG_06839 Chaetomium globosum CHGG_06839 N 0.000
CIMG_07762 Coccidioides immitis CIMG_07762 N 0.000
CJA06296 Caenorhabditis japonica CJA06296 N 0.000
CMU_026350 Cryptosporidium muris CMU_026350 N 0.000
CNBG_1409 Cryptococcus neoformans CNBG_1409 N 0.000
CPIJ000912 Culex quinquefasciatus CPIJ000912 N 0.000
CpipJ_CPIJ000912 Culex pipiens CpipJ_CPIJ000912 N 0.000
CPSG_09333 Coccidioides posadasii CPSG_09333 N 0.000
CRE29496 Caenorhabditis remanei CRE29496 N 0.000
DGIL_AUG5s502g5t1 Acyrtosiphon pisum DGIL_AUG5s502g5t1 N 0.000
EAT81165.2 Phaeosphaeria nodorum EAT81165.2 N 0.000
EDO07903.1 Babesia bovis EDO07903.1 N 0.000
EFA80431.1 Polysphondylium pallidum EFA80431.1 N 0.000
PPIL4 Anolis carolinensis ENSACAG00000006936 N 0.000
A6QP53_BOVIN Bos taurus ENSBTAG00000016980 N 0.000
Q6JDI1_CANFA Canis familiaris ENSCAFG00000000379 N 0.000
ENSCING00000006773 Ciona intestinalis ENSCING00000006773 I 0.000
PPIL4 Callithrix jacchus ENSCJAG00000019613 N 0.000
PPIL4 Cavia porcellus ENSCPOG00000014614 N 0.000
ENSCSAVG00000010619 Ciona savignyi ENSCSAVG00000010619 N 0.000
ppil4 Danio rerio ENSDARG00000043854 N 0.000
PPIL4 Equus caballus ENSECAG00000021819 N 0.000
PPIL4 Erinaceus europaeus ENSEEUG00000000959 N 0.000
PPIL4 Homo sapiens ENSG00000131013 N 0.000
PPIL4 Gasterosteus aculeatus ENSGACG00000006639 N 0.000
PPIL4 Gallus gallus ENSGALG00000012364 N 0.000
PPIL4 Gorilla gorilla ENSGGOG00000009686 N 0.000
PPIL4 Loxodonta africana ENSLAFG00000026804 N 0.000
PPIL4 Meleagris gallopavo ENSMGAG00000012596 N 0.000
PPIL4 Microcebus murinus ENSMICG00000006287 N 0.000
PPIL4 Myotis lucifugus ENSMLUG00000002766 N 0.000
PPIL4 Macaca mulatta ENSMMUG00000023067 N 0.000
PPIL4 Monodelphis domestica ENSMODG00000016825 N 0.000
Ppil4 Mus musculus ENSMUSG00000015757 N 0.000
ENSOANG00000001063 Ornithorhynchus anatinus ENSOANG00000001063 N 0.000
PPIL4 Oryctolagus cuniculus ENSOCUG00000007696 N 0.000
PPIL4 Otolemur garnettii ENSOGAG00000014153 N 0.000
PPIL4 Ochotona princeps ENSOPRG00000005619 N 0.000
PPIL4 Oryzias latipes ENSORLG00000015310 N 0.000
PPIL4 Procavia capensis ENSPCAG00000008203 N 0.000
PPIL4 Pan troglodytes ENSPTRG00000018692 N 0.000
PPIL4 Pteropus vampyrus ENSPVAG00000000746 N 0.000
Ppil4 Rattus norvegicus ENSRNOG00000015552 N 0.000
PPIL4 Sorex araneus ENSSARG00000011244 N 0.000
PPIL4 Spermophilus tridecemlineatus ENSSTOG00000013980 N 0.000
PPIL4 Taeniopygia guttata ENSTGUG00000010655 N 0.000
PPIL4 Tetraodon nigroviridis ENSTNIG00000002706 N 0.000
PPIL4 Takifugu rubripes ENSTRUG00000006670 N 0.000
PPIL4 Tursiops truncatus ENSTTRG00000006014 N 0.000
PPIL4 Vicugna pacos ENSVPAG00000005157 N 0.000
ppil4 Xenopus tropicalis ENSXETG00000021385 N 0.000
estExt_fgenesh1_kg.C_170006 Cochliobolus heterostrophus C5 estExt_fgenesh1_kg.C_170006 N 0.000
estExt_fgenesh1_kg.C_40083 Melampsora laricis populina estExt_fgenesh1_kg.C_40083 N 0.000
estExt_fgenesh2_kg.C_140159 Agaricus bisporus estExt_fgenesh2_kg.C_140159 N 0.000
estExt_fgenesh2_pm.C_1170007 Branchiostoma floridae estExt_fgenesh2_pm.C_1170007 N 0.000
estExt_fgenesh3_pg.C_910016 Postia placenta estExt_fgenesh3_pg.C_910016 N 0.000
estExt_fgeneshCV_pg.C_40316 Chlorella vulgaris estExt_fgeneshCV_pg.C_40316 N 0.000
estExt_Genewise1.C_180101 Capitella teleta estExt_Genewise1.C_180101 N 0.000
estExt_Genewise1.C_30053 Myceliophthora thermophila estExt_Genewise1.C_30053 N 0.000
estExt_Genewise1Plus.C_11662 Tremella mesenterica estExt_Genewise1Plus.C_11662 N 0.000
estExt_Genewise1Plus.C_12820 Neurospora discreta estExt_Genewise1Plus.C_12820 N 0.000
estExt_Genewise1Plus.C_40228 Batrachochytrium dendrobatidis estExt_Genewise1Plus.C_40228 N 0.000
estExt_Genewise1Plus.C_40585 Mucor circinelloides estExt_Genewise1Plus.C_40585 N 0.000
estExt_Genewise1Plus.C_61472 Cryphonectria parasitica estExt_Genewise1Plus.C_61472 N 0.000
estExt_Genewise1Plus.C_chr_40303 Mycosphaerella graminicola estExt_Genewise1Plus.C_chr_40303 N 0.000
estExt_GeneWisePlus.C_270056 Trichoderma reesei estExt_GeneWisePlus.C_270056 N 0.000
EuGene.1200010297 Ostreococcus RCC809 EuGene.1200010297 N 0.000
e_gw.42.57.1 Nematostella vectensis e_gw.42.57.1 N 0.000
e_gw1.11.236.1 Trichoderma atroviride e_gw1.11.236.1 N 0.000
e_gw1.20.215.1 Phycomyces blakesleeanus e_gw1.20.215.1 N 0.000
e_gw1.4.2113.1 Pleurotus ostreatus e_gw1.4.2113.1 N 0.000
e_gw1.4.370.1 Sporobolomyces roseus e_gw1.4.370.1 N 0.000
e_gw1.4.423.1 Coccomyxa C 169 e_gw1.4.423.1 N 0.000
e_gw1.6.1078.1 Selaginella moellendorfii e_gw1.6.1078.1 N 0.000
e_gw1.6.80.1 Monosiga brevicollis e_gw1.6.80.1 N 0.000
e_gww1.4.788.1 Laccaria bicolor e_gww1.4.788.1 N 0.000
e_gww2.22.65.1 Phanerochaete chrysosporium e_gww2.22.65.1 N 0.000
sig-7 Caenorhabditis elegans F39H2.2 N 0.000
CG5808 Drosophila melanogaster FBgn0027617 N 0.000
GF18772 Drosophila ananassae FBgn0095789 N 0.000
GG12319 Drosophila erecta FBgn0104609 N 0.000
GH18460 Drosophila grimshawi FBgn0125927 N 0.000
GI24038 Drosophila mojavensis FBgn0146761 N 0.000
GL13859 Drosophila persimilis FBgn0151464 N 0.000
GM23461 Drosophila sechellia FBgn0178328 N 0.000
GD18267 Drosophila simulans FBgn0189800 N 0.000
GJ23668 Drosophila virilis FBgn0210765 N 0.000
GK13166 Drosophila willistoni FBgn0215175 N 0.000
GE10772 Drosophila yakuba FBgn0228614 N 0.000
GA26948-RA Drosophila pseudoobscura FBgn0248319 N 0.000
fgenesh1_pm.00868_#_101 Aspergillus carbonarius fgenesh1_pm.00868_#_101 N 0.000
fgenesh1_pm.C_scaffold_1000049 Schizophyllum commune fgenesh1_pm.C_scaffold_1000049 N 0.000
fgenesh1_pm.C_scaffold_3000471 Trichoderma virens fgenesh1_pm.C_scaffold_3000471 N 0.000
fgenesh1_pm.C_scaffold_9000117 Mycosphaerella fijiensis fgenesh1_pm.C_scaffold_9000117 N 0.000
fgenesh1_pm.sca_11_chr8_3_0000173 Nectria haematococca fgenesh1_pm.sca_11_chr8_3_0000173 N 0.000
fgenesh3_kg.4__300__1748_1_CCOZ_CCPA_CCPB_CCPC_EXTA Heterobasidion annosum fgenesh3_kg.4__300__1748_1_CCOZ_CCPA_CCPB_CCPC_EXTA N 0.000
fgeneshTA2_pg.C_scaffold_8000290 Trichoplax adhaerens fgeneshTA2_pg.C_scaffold_8000290 N 0.000
FGSG_04479 Fusarium graminearum FGSG_04479 N 0.000
FOXG_13736 Fusarium oxysporum FOXG_13736 N 0.000
FVEG_11166 Fusarium verticillioides FVEG_11166 N 0.000
GLRG_06614 Colletotrichum graminicola GLRG_06614 N 0.000
GSPATP00006636001 Paramecium tetraurelia GSPATP00006636001 N 0.000
GSTUMT00009813001 Tuber melanosporum GSTUMT00009813001 N 0.000
gw1.1.256.1 Neurospora tetrasperma gw1.1.256.1 N 0.000
gw1.12.00.150.1 Ostreococcus tauri gw1.12.00.150.1 N 0.000
gw1.13.70.1 Lottia gigantea gw1.13.70.1 N 0.000
gwEuk.12.143.1 Ostreococcus lucimarinus gwEuk.12.143.1 N 0.000
HCAG_04417 Histoplasma capsulatum HCAG_04417 N 0.000
LOAG_08216 Loa loa LOAG_08216 N 0.000
MCYG_06073 Microsporum canis MCYG_06073 N 0.000
MGG_10681 Magnaporthe oryzae MGG_10681 N 0.000
MGYG_05886 Microsporum gypseum MGYG_05886 N 0.000
Minc10084 Meloidogyne incognita Minc10084 N 0.000
nasonia_NCBI_hmm783174 Nasonia vitripennis nasonia_NCBI_hmm783174 N 0.000
NCU10166 Neurospora crassa NCU10166 N 0.000
PABG_01156 Paracoccidioides brasiliensis PABG_01156 N 0.000
Pa_2_13850 Podospora anserina Pa_2_13850 N 0.000
Pc21g11960 Penicillium chrysogenum Pc21g11960 N 0.000
PGTG_10482 Puccinia graminis PGTG_10482 N 0.000
PGTG_14680 Puccinia graminis PGTG_14680 N 0.000
PHUM268300 Pediculus humanus PHUM268300 N 0.000
PMAA_010740 Penicillium marneffei PMAA_010740 N 0.000
PredSwiss_ASS2010_933.2 Pneumocystis carinii PredSwiss_ASS2010_933.2 N 0.000
PredSwiss_CON599.3 Pneumocystis carinii PredSwiss_CON599.3 N 0.000
PTRG_04608 Pyrenophora tritici repentis PTRG_04608 N 0.000
PTSG_07932 Salpingoeca rosetta PTSG_07932 N 0.000
PTTG_06854 Puccinia triticina PTTG_06854 N 0.000
RO3G_06974 Rhizopus oryzae RO3G_06974 N 0.000
SJAG_00470 Schizosaccharomyces japonicus SJAG_00470 N 0.000
Sjc_0091550 Schistosoma japonicum Sjc_0091550 N 0.000
Smp_165540 Schistosoma mansoni Smp_165540 N 0.000
SNAPOd2T00004354001 Oikopleura dioica SNAPOd2T00004354001 N 0.000
SNOG_11457 Stagonospora nodorum SNOG_11457 N 0.000
SOCG_02586 Schizosaccharomyces octosporus SOCG_02586 N 0.000
cyp6 Schizosaccharomyces pombe SPBC17G9.05 N 0.000
SPOG_01415 Schizosaccharomyces cryophilus SPOG_01415 N 0.000
SPPG_03169 Spizellomyces punctatus SPPG_03169 N 0.000
TEQG_07016 Trichophyton equinum TEQG_07016 N 0.000
TERG_06028 Trichophyton rubrum TERG_06028 N 0.000
TRV_03115 Trichophyton verrucosum TRV_03115 N 0.000
UM03490 Ustilago maydis UM03490 N 0.000
UREG_02113 Uncinocarpus reesii UREG_02113 N 0.000
VDAG_02606 Verticillium dahliae VDAG_02606 N 0.000
VDBG_02138 Verticillium albo atrum VDBG_02138 N 0.000
WUBG_04730 Wuchereria bancrofti WUBG_04730 N 0.000
XP_001180629.1 Strongylocentrotus purpuratus XP_001180629.1 N 0.000
XP_001192414.1 Strongylocentrotus purpuratus XP_001192414.1 N 0.000
XP_782627.2 Strongylocentrotus purpuratus XP_782627.2 N 0.000
XP_787384.2 Strongylocentrotus purpuratus XP_787384.2 N 0.000