CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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fgenesh2_pg.scaffold_6000171
(
Branchiostoma floridae
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
fgenesh2_pg.scaffold_6000171
T52273_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
HNRNPC
M025_0.6
Homo sapiens
HUUUUUK
RNAcompete
Ray et al.(2013)
RNCMPT00025
0.734
RALY
M150_0.6
Homo sapiens
UUUUUUB
RNAcompete
Ray et al.(2013)
RNCMPT00159
0.703
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
fgenesh2_pg.scaffold_6000171
RRM
68
131
IFIGNLNTFRVTKADVEEIFSYYGYIKGCSVHKGYAFVQYTNEADARAAATSEDGRMLAGQVLD
Links
Other
RRM
family RBPs
Other
Branchiostoma floridae
RBPs
85 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
AAA60937
Xenopus laevis
AAA60937
I
0.703
AAH41534
Xenopus laevis
AAH41534
I
0.719
AAH71084
Xenopus laevis
AAH71084
I
0.703
Ame_R004237
Ailuropoda melanoleuca
Ame_R004237
I
0.703
Ame_R016471
Ailuropoda melanoleuca
Ame_R016471
I
0.734
ENSACAG00000003296
Anolis carolinensis
ENSACAG00000003296
I
0.734
RALY
Anolis carolinensis
ENSACAG00000008983
I
0.703
Q3SX47_BOVIN
Bos taurus
ENSBTAG00000011396
I
0.734
Q3T0Y6_BOVIN
Bos taurus
ENSBTAG00000016524
I
0.703
ENSCAFG00000005504
Canis familiaris
ENSCAFG00000005504
I
0.734
RALY
Canis familiaris
ENSCAFG00000007490
I
0.703
RALY
Choloepus hoffmanni
ENSCHOG00000000266
I
0.703
LOC100400868
Callithrix jacchus
ENSCJAG00000009033
I
0.734
ENSCJAG00000009354
Callithrix jacchus
ENSCJAG00000009354
I
0.703
LOC100401730
Callithrix jacchus
ENSCJAG00000018361
I
0.703
RALY
Cavia porcellus
ENSCPOG00000000309
I
0.703
ENSCPOG00000001474
Cavia porcellus
ENSCPOG00000001474
I
0.719
ENSCPOG00000023770
Cavia porcellus
ENSCPOG00000023770
I
0.719
zgc:55733
Danio rerio
ENSDARG00000022579
I
0.750
zgc:55701
Danio rerio
ENSDARG00000053810
I
0.719
ENSDNOG00000003161
Dasypus novemcinctus
ENSDNOG00000003161
I
0.734
RALY
Dasypus novemcinctus
ENSDNOG00000003227
I
0.703
Raly
Dipodomys ordii
ENSDORG00000013400
I
0.703
LOC100054239
Equus caballus
ENSECAG00000012357
I
0.703
LOC100059269
Equus caballus
ENSECAG00000017645
I
0.734
RALY
Erinaceus europaeus
ENSEEUG00000005356
I
0.719
HNRNPC
Erinaceus europaeus
ENSEEUG00000007472
I
0.734
HNRNPC
Homo sapiens
ENSG00000092199
D
0.734
RALY
Homo sapiens
ENSG00000125970
D
0.703
ENSGACG00000017772
Gasterosteus aculeatus
ENSGACG00000017772
I
0.719
ENSGACG00000018932
Gasterosteus aculeatus
ENSGACG00000018932
I
0.734
RALY
Gallus gallus
ENSGALG00000002054
I
0.703
RALY
Gorilla gorilla
ENSGGOG00000022709
I
0.703
HNRNPC
Gorilla gorilla
ENSGGOG00000023015
I
0.734
RALY
Loxodonta africana
ENSLAFG00000000321
I
0.703
ENSLAFG00000009341
Loxodonta africana
ENSLAFG00000009341
I
0.734
HNRNPC
Macropus eugenii
ENSMEUG00000010928
I
0.734
RALY
Meleagris gallopavo
ENSMGAG00000002214
I
0.703
RALY
Myotis lucifugus
ENSMLUG00000005330
I
0.703
HNRNPC
Myotis lucifugus
ENSMLUG00000007853
I
0.734
XM_001095481.1
Macaca mulatta
ENSMMUG00000003920
I
0.734
HNRNPC
Macaca mulatta
ENSMMUG00000014809
I
0.734
RALY
Macaca mulatta
ENSMMUG00000018093
I
0.703
XP_001109022.1
Macaca mulatta
ENSMMUG00000018813
I
0.719
XM_001381335.1
Monodelphis domestica
ENSMODG00000002819
I
0.703
XM_001368850.1
Monodelphis domestica
ENSMODG00000006606
I
0.734
Raly
Mus musculus
ENSMUSG00000027593
I
0.703
Hnrnpc
Mus musculus
ENSMUSG00000060373
I
0.734
ENSOANG00000015707
Ornithorhynchus anatinus
ENSOANG00000015707
I
0.734
HNRPC_RABIT
Oryctolagus cuniculus
ENSOCUG00000000339
I
0.734
RALY
Oryctolagus cuniculus
ENSOCUG00000000477
I
0.703
ENSOCUG00000008851
Oryctolagus cuniculus
ENSOCUG00000008851
I
0.719
ENSOCUG00000013026
Oryctolagus cuniculus
ENSOCUG00000013026
I
0.734
HNRPC_RABIT
Oryctolagus cuniculus
ENSOCUG00000015029
I
0.734
HNRNPC
Otolemur garnettii
ENSOGAG00000012543
I
0.734
ENSOPRG00000002800
Ochotona princeps
ENSOPRG00000002800
I
0.719
RALY
Ochotona princeps
ENSOPRG00000008423
I
0.719
ENSORLG00000003144
Oryzias latipes
ENSORLG00000003144
I
0.750
ENSORLG00000009999
Oryzias latipes
ENSORLG00000009999
I
0.734
ENSPPYG00000001860
Pongo pygmaeus
ENSPPYG00000001860
I
0.703
ENSPPYG00000005593
Pongo pygmaeus
ENSPPYG00000005593
I
0.734
ENSPPYG00000010932
Pongo pygmaeus
ENSPPYG00000010932
I
0.703
XR_022011.1
Pan troglodytes
ENSPTRG00000006118
I
0.734
RALY
Pan troglodytes
ENSPTRG00000013410
I
0.703
HNRNPCL1
Pteropus vampyrus
ENSPVAG00000004499
I
0.734
D4ACR0_RAT
Rattus norvegicus
ENSRNOG00000011621
I
0.734
Raly
Rattus norvegicus
ENSRNOG00000017405
I
0.703
HNRNPC
Sorex araneus
ENSSARG00000003711
I
0.734
ENSSSCG00000007274
Sus scrofa
ENSSSCG00000007274
I
0.703
ENSSSCG00000007275
Sus scrofa
ENSSSCG00000007275
I
0.703
RALY
Spermophilus tridecemlineatus
ENSSTOG00000008810
I
0.703
ENSSTOG00000012120
Spermophilus tridecemlineatus
ENSSTOG00000012120
I
0.719
ENSTBEG00000011514
Tupaia belangeri
ENSTBEG00000011514
I
0.734
RALY
Taeniopygia guttata
ENSTGUG00000003715
I
0.703
ENSTNIG00000000334
Tetraodon nigroviridis
ENSTNIG00000000334
I
0.750
HNRNPC
Takifugu rubripes
ENSTRUG00000002153
I
0.750
ENSTSYG00000003305
Tarsius syrichta
ENSTSYG00000003305
I
0.734
RALY
Tursiops truncatus
ENSTTRG00000006590
I
0.703
HNRNPC
Tursiops truncatus
ENSTTRG00000016055
I
0.734
RALY
Vicugna pacos
ENSVPAG00000000373
I
0.703
HNRNPCL1
Vicugna pacos
ENSVPAG00000007337
I
0.734
hnrnpc
Xenopus tropicalis
ENSXETG00000016162
I
0.734
fgenesh2_pg.scaffold_127000006
Branchiostoma floridae
fgenesh2_pg.scaffold_127000006
N
0.703
fgenesh2_pg.scaffold_9000128
Branchiostoma floridae
fgenesh2_pg.scaffold_9000128
N
0.703
P19600
Xenopus laevis
P19600
I
0.703