CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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s_447845
(
Phytophthora sojae
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
s_447845
T53903_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
s_447845
RRM
254
321
IFIAGLPWSATEDEVKEHFAGCGEVTAARIPMQNGRSSGTAFVTFATAEAAEAALAMDGQDFGGRWMK
s_447845
RRM
341
410
IFIGNLAWDVDENTVREFFGECGEITSCRLATDRETGEFRGFGHVDFATTEAVDEAVKLAGEYLNNRAIR
Links
Other
RRM
family RBPs
Other
Phytophthora sojae
RBPs
3 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
estExt_fgenesh1_pm.C_130193
Phytophthora capsici
estExt_fgenesh1_pm.C_130193
N
0.906
fgenesh1_pg.C_scaffold_25000009
Phytophthora ramorum
fgenesh1_pg.C_scaffold_25000009
N
0.884
PITG_02629
Phytophthora infestans
PITG_02629
N
0.920