CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
Home
Tools
Download cart
Bulk downloads
Database stats
Contact us
Help
How to cite
GRMZM2G131943
(
Zea mays
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
GRMZM2G131943
T54138_0.6
MaizeSequence (2009-Oct-16)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
GRMZM2G131943_P01
RRM
396
465
LFMGNVPWKAEFDDVKEFFEDVGEVVDVRFPTHDDGNRKGFCYVEFVSAEAAAKAYKEKQSKELHGREVR
GRMZM2G131943_P01
RRM
496
567
IFIRGFDKNLSEDEIRSSLEQHFSDCGEMTRVSIPTDHESGAIKGMAYIDFKDQDSVSKALELSGSDIGGGY
GRMZM2G131943_P02
RRM
391
460
LFMGNVPWKAEFDDVKEFFEDVGEVVDVRFPTHDDGNRKGFCYVEFVSAEAAAKAYKEKQSKELHGREVR
GRMZM2G131943_P02
RRM
491
562
IFIRGFDKNLSEDEIRSSLEQHFSDCGEMTRVSIPTDHESGAIKGMAYIDFKDQDSVSKALELSGSDIGGGY
GRMZM2G131943_P03
RRM
396
465
LFMGNVPWKAEFDDVKEFFEDVGEVVDVRFPTHDDGNRKGFCYVEFVSAEAAAKAYKEKQSKELHGREVR
GRMZM2G131943_P03
RRM
496
567
IFIRGFDKNLSEDEIRSSLEQHFSDCGEMTRVSIPTDHESGAIKGMAYIDFKDQDSVSKALELSGSDIGGGY
GRMZM2G131943_P04
RRM
395
464
LFMGNVPWKAEFDDVKEFFEDVGEVVDVRFPTHDDGNRKGFCYVEFVSAEAAAKAYKEKQSKELHGREVR
GRMZM2G131943_P04
RRM
495
566
IFIRGFDKNLSEDEIRSSLEQHFSDCGEMTRVSIPTDHESGAIKGMAYIDFKDQDSVSKALELSGSDIGGGY
GRMZM2G131943_P05
RRM
1
68
MGNVPWKAEFDDVKEFFEDVGEVVDVRFPTHDDGNRKGFCYVEFVSAEAAAKAYKEKQSKELHGREVR
GRMZM2G131943_P05
RRM
99
170
IFIRGFDKNLSEDEIRSSLEQHFSDCGEMTRVSIPTDHESGAIKGMAYIDFKDQDSVSKALELSGSDIGGGY
Links
Other
RRM
family RBPs
Other
Zea mays
RBPs
3 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
GRMZM2G435248
Zea mays
GRMZM2G435248
N
0.722
SB07G005510
Sorghum bicolor
Sb07g005510
N
0.831