CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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SPRG_01613
(
Saprolegnia parasitica
)
S1
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00575 (S1)
IPR003029
SPRG_01613
T60025_0.6
Broad (2011-Oct-27)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
eIF-2alpha
M231_0.6
Drosophila melanogaster
WGCAUG
RNAcompete
Ray et al.(2013)
RNCMPT00273
0.711
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
SPRG_01613T0
S1
26
86
YPEIDELVVVNVRSIAEMGAYVSLLEYNNIEGMILLSELSRRRIRSINKLVREKGYIDLSK
Links
Other
S1
family RBPs
Other
Saprolegnia parasitica
RBPs
65 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
AAH46576
Xenopus laevis
AAH46576
I
0.711
amel4_ncbi_hmm23817
Apis mellifera
amel4_ncbi_hmm23817
I
0.711
Ame_R013633
Ailuropoda melanoleuca
Ame_R013633
I
0.711
BGIBMGA004302
Bombyx mori
BGIBMGA004302
I
0.711
DGIL_AUG5s12507g4t1
Acyrtosiphon pisum
DGIL_AUG5s12507g4t1
I
0.724
EIF2S1
Anolis carolinensis
ENSACAG00000005994
I
0.711
IF2A_BOVIN
Bos taurus
ENSBTAG00000016311
I
0.711
EIF2S1
Canis familiaris
ENSCAFG00000016386
I
0.711
ENSCHOG00000003744
Choloepus hoffmanni
ENSCHOG00000003744
I
0.711
ENSCHOG00000009030
Choloepus hoffmanni
ENSCHOG00000009030
I
0.711
LOC100399114
Callithrix jacchus
ENSCJAG00000015368
I
0.711
EIF2S1
Cavia porcellus
ENSCPOG00000003313
I
0.711
eif2s1l
Danio rerio
ENSDARG00000005827
I
0.711
eif2s1
Danio rerio
ENSDARG00000052178
I
0.711
Eif2s1
Dipodomys ordii
ENSDORG00000002382
I
0.711
LOC100052709
Equus caballus
ENSECAG00000018424
I
0.711
EIF2S1
Erinaceus europaeus
ENSEEUG00000010225
I
0.711
EIF2S1
Echinops telfairi
ENSETEG00000019003
I
0.711
EIF2S1
Homo sapiens
ENSG00000134001
I
0.711
EIF2S1
Gasterosteus aculeatus
ENSGACG00000008569
I
0.711
IF2A_CHICK
Gallus gallus
ENSGALG00000009565
I
0.711
EIF2S1
Gorilla gorilla
ENSGGOG00000001603
I
0.711
EIF2S1
Loxodonta africana
ENSLAFG00000013423
I
0.711
EIF2S1
Meleagris gallopavo
ENSMGAG00000011974
I
0.711
EIF2S1
Microcebus murinus
ENSMICG00000010793
I
0.711
EIF2S1
Macaca mulatta
ENSMMUG00000021419
I
0.711
EIF2S1
Monodelphis domestica
ENSMODG00000009911
I
0.711
Eif2s1
Mus musculus
ENSMUSG00000021116
I
0.711
EIF2S1
Ornithorhynchus anatinus
ENSOANG00000005409
I
0.711
IF2A_RABIT
Oryctolagus cuniculus
ENSOCUG00000012023
I
0.711
EIF2S1
Ochotona princeps
ENSOPRG00000004520
I
0.711
EIF2S1
Oryzias latipes
ENSORLG00000011844
I
0.711
EIF2S1
Procavia capensis
ENSPCAG00000002613
I
0.711
ENSPPYG00000005921
Pongo pygmaeus
ENSPPYG00000005921
I
0.711
EIF2S1
Pan troglodytes
ENSPTRG00000006462
I
0.711
Eif2s1
Rattus norvegicus
ENSRNOG00000009432
I
0.711
EIF2S1
Sorex araneus
ENSSARG00000011682
I
0.711
EIF2S1
Sus scrofa
ENSSSCG00000002289
I
0.711
EIF2S1
Spermophilus tridecemlineatus
ENSSTOG00000001565
I
0.711
EIF2S1
Taeniopygia guttata
ENSTGUG00000011542
I
0.711
EIF2S1
Tetraodon nigroviridis
ENSTNIG00000012223
I
0.711
EIF2S1
Takifugu rubripes
ENSTRUG00000017958
I
0.711
EIF2S1
Tursiops truncatus
ENSTTRG00000015806
I
0.724
estExt_fgenesh2_pm.C_1660010
Branchiostoma floridae
estExt_fgenesh2_pm.C_1660010
I
0.711
estExt_fgenesh2_pm.C_5760005
Branchiostoma floridae
estExt_fgenesh2_pm.C_5760005
I
0.711
estExt_GenewiseH_1.C_750056
Nematostella vectensis
estExt_GenewiseH_1.C_750056
I
0.724
e_gw.114.57.1
Nematostella vectensis
e_gw.114.57.1
I
0.724
GA22144-RA
Drosophila pseudoobscura
FBgn0082124
I
0.711
GF19374
Drosophila ananassae
FBgn0096384
I
0.711
GG19321
Drosophila erecta
FBgn0111525
I
0.711
GI21763
Drosophila mojavensis
FBgn0144493
I
0.711
GL20268
Drosophila persimilis
FBgn0157863
I
0.711
GM13399
Drosophila sechellia
FBgn0168330
I
0.711
GD15749
Drosophila simulans
FBgn0187410
I
0.711
GJ19141
Drosophila virilis
FBgn0206286
I
0.711
GK25248
Drosophila willistoni
FBgn0227207
I
0.711
GE15968
Drosophila yakuba
FBgn0233524
I
0.711
eIF-2alpha
Drosophila melanogaster
FBgn0261609
D
0.711
fgenesh1_pm.C_scaffold_10000060
Batrachochytrium dendrobatidis
fgenesh1_pm.C_scaffold_10000060
I
0.711
fgenesh1_pm.C_scaffold_69000005
Phytophthora ramorum
fgenesh1_pm.C_scaffold_69000005
I
0.763
nasonia_NCBI_hmm338664
Nasonia vitripennis
nasonia_NCBI_hmm338664
I
0.711
PASA_GEN_0500123
Daphnia pulex
PASA_GEN_0500123
I
0.724
PHUM551010
Pediculus humanus
PHUM551010
I
0.711
PITG_07885
Phytophthora infestans
PITG_07885
I
0.763
Q7ZTK4
Xenopus laevis
Q7ZTK4
I
0.711