CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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TcIL3000.10.2650
(
Trypanosoma congolense
)
CCCH ZF,CCHC ZF,RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
PF00098 (zf-CCHC)
PF00076 (RRM_1)
IPR000571
IPR001878
IPR000504
TcIL3000.10.2650
T00023_0.6
EuPathDB (2010-Sep-21)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
TcIL3000.10.2650
CCCH ZF
2
27
YQDRCIFFSKMGACRHGDNCTKIHVR
TcIL3000.10.2650
RRM
72
129
KETWRTFMELGHIAELRVVSNLGDHLLGNVYIRFEDSHEALRVVRELKAKKLNNIVLL
TcIL3000.10.2650
CCCH ZF
147
163
LEGNCERGSQCNYLHIM
TcIL3000.10.2650
CCHC ZF
216
233
DLCHICGKSGHISRDCPL
Links
Other
CCCH ZF,CCHC ZF,RRM
family RBPs
Other
Trypanosoma congolense
RBPs
2 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Tbg972.10.4040
Trypanosoma brucei
Tbg972.10.4040
N
0.899
TvY486_1003180
Trypanosoma vivax
TvY486_1003180
N
0.840