CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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RBM22
(
Homo sapiens
)
CCCH ZF,RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
PF00076 (RRM_1)
IPR000571
IPR000504
ENSG00000086589
T00506_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSP00000199814
CCCH ZF
163
185
HICSFWVKGECKRGEECPYRHEK
ENSP00000199814
RRM
234
299
LYVGGLGDTITETDLRNHFYQFGEIRTITVVQRQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLN
ENSP00000412118
CCCH ZF
114
136
HICSFWVKGECKRGEECPYRHEK
ENSP00000412118
RRM
185
250
LYVGGLGDTITETDLRNHFYQFGEIRTITVVQRQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLN
Links
Other
CCCH ZF,RRM
family RBPs
Other
Homo sapiens
RBPs
49 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
CpipJ_CPIJ001189
Culex pipiens
CpipJ_CPIJ001189
N
0.000
gw1.5.847.1
Lottia gigantea
gw1.5.847.1
N
0.000
e_gw1.5.374.1
Trichoplax adhaerens
e_gw1.5.374.1
N
0.000
PHUM352150
Pediculus humanus
PHUM352150
N
0.000
ZC3H12D
Taeniopygia guttata
ENSTGUG00000010664
N
0.000
ZC3H12D
Tupaia belangeri
ENSTBEG00000000892
N
0.000
ZC3H12D
Oryzias latipes
ENSORLG00000015280
N
0.000
ZC3H12D
Ochotona princeps
ENSOPRG00000014034
N
0.000
ZC3H12D
Monodelphis domestica
ENSMODG00000016829
N
0.000
ZC3H12D
Macropus eugenii
ENSMEUG00000004686
N
0.000
ZC3H12D
Gasterosteus aculeatus
ENSGACG00000006636
N
0.000
ZC3H12D
Echinops telfairi
ENSETEG00000016119
N
0.000
AGAP001272
Anopheles gambiae
AGAP001272
N
0.000
AAEL011652
Aedes aegypti
AAEL011652
N
0.000
Ame_R008666
Ailuropoda melanoleuca
Ame_R008666
N
0.000