LOC100063597 (Equus caballus)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 ENSECAG00000018860 T02535_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
ZFP36
M350_0.6 		Homo sapiens UUAUUUAWW SELEX
Cook et al.(2011)
951_12324455 		0.722
ZFP36
M269_0.6 		Homo sapiens UUAUUUAWW SELEX
Cook et al.(2011)
221_12324455 		0.722
ZFP36
M268_0.6 		Homo sapiens Sequence logo not available AUUUA RIP-chip
Cook et al.(2011)
194_18256032.1 		0.722
ZFP36
M267_0.6 		Homo sapiens Sequence logo not available UUAUUUAUU RIP-chip
Cook et al.(2011)
194_18256032 		0.722
ZFP36
M266_0.6 		Homo sapiens Sequence logo not available UUGUGS RIP-chip
Cook et al.(2011)
193_18367721.3 		0.722
ZFP36
M265_0.6 		Homo sapiens Sequence logo not available CUUGU RIP-chip
Cook et al.(2011)
193_18367721.2 		0.722
ZFP36
M264_0.6 		Homo sapiens Sequence logo not available HCYUBY RIP-chip
Cook et al.(2011)
193_18367721.1 		0.722
ZFP36
M263_0.6 		Homo sapiens Sequence logo not available AAUAA RIP-chip
Cook et al.(2011)
193_18367721 		0.722
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSECAP00000016390 CCCH ZF 115 141
ENSECAP00000016390 CCCH ZF 153 179

Links

Other CCCH ZF family RBPs
Other Equus caballus RBPs

161 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ZFP36L2 Anolis carolinensis ENSACAG00000014740 I 0.944
Zfp36l2 Rattus norvegicus ENSRNOG00000005067 I 0.926
ENSSSCG00000008460 Sus scrofa ENSSSCG00000008460 I 0.926
ZFP36L2 Sus scrofa ENSSSCG00000008461 I 0.926
ZFP36L2 Tupaia belangeri ENSTBEG00000012370 I 0.926
ZFP36L1 Taeniopygia guttata ENSTGUG00000011494 I 0.963
ZFP36L2 Tursiops truncatus ENSTTRG00000006356 I 0.926
zfp36l2 Xenopus tropicalis ENSXETG00000009274 I 0.944
Ame_R000168 Ailuropoda melanoleuca Ame_R000168 I 0.926
AAD24209 Xenopus laevis AAD24209 I 0.963
AAH44086 Xenopus laevis AAH44086 I 0.944
AAH84221 Xenopus laevis AAH84221 I 0.963
BAC54909 Xenopus laevis BAC54909 I 0.963
Q7ZXW9 Xenopus laevis Q7ZXW9 I 0.944
ZFP36L1 Pteropus vampyrus ENSPVAG00000011686 I 1.000
XR_022888.1 Pan troglodytes ENSPTRG00000030712 I 1.000
ZFP36L2 Pan troglodytes ENSPTRG00000011870 I 0.926
Q1JP65_BOVIN Bos taurus ENSBTAG00000003553 I 0.926
ZFP36L2 Canis familiaris ENSCAFG00000002438 I 0.926
LOC100386590 Callithrix jacchus ENSCJAG00000014571 I 0.926
ZFP36L2 Cavia porcellus ENSCPOG00000022038 I 0.944
ZFP36L2 Homo sapiens ENSG00000152518 I 0.926
ZFP36L2 Gorilla gorilla ENSGGOG00000001402 I 0.926
Q805B4 Xenopus laevis Q805B4 I 0.963
ZFP36L2 Loxodonta africana ENSLAFG00000004265 I 0.926
ZFP36L2 Macropus eugenii ENSMEUG00000010649 I 0.926
ZFP36L2 Microcebus murinus ENSMICG00000010318 I 0.926
ZFP36L2 Myotis lucifugus ENSMLUG00000015588 I 0.926
ZFP36L2 Monodelphis domestica ENSMODG00000000407 I 0.926
Zfp36l2 Mus musculus ENSMUSG00000045817 I 0.926
ENSPPYG00000012458 Pongo pygmaeus ENSPPYG00000012458 I 0.926
fgenesh2_pg.scaffold_13000206 Monosiga brevicollis fgenesh2_pg.scaffold_13000206 N 0.759