CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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ZC3H12D
(
Monodelphis domestica
)
CCCH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
IPR000571
ENSMODG00000016829
T02971_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSMODP00000021006
CCCH ZF
262
271
QHCPYGRKCT
ENSMODP00000021006
CCCH ZF
266
282
YGRKCTYGVKCKFYHPE
Links
Other
CCCH ZF
family RBPs
Other
Monodelphis domestica
RBPs
15 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
CpipJ_CPIJ001189
Culex pipiens
CpipJ_CPIJ001189
N
0.786
gw1.5.847.1
Lottia gigantea
gw1.5.847.1
N
0.750
e_gw1.5.374.1
Trichoplax adhaerens
e_gw1.5.374.1
N
0.714
PHUM352150
Pediculus humanus
PHUM352150
N
0.714
ZC3H12D
Taeniopygia guttata
ENSTGUG00000010664
N
0.821
ZC3H12D
Tupaia belangeri
ENSTBEG00000000892
N
0.767
ZC3H12D
Oryzias latipes
ENSORLG00000015280
N
0.833
ZC3H12D
Ochotona princeps
ENSOPRG00000014034
N
0.893
ZC3H12D
Macropus eugenii
ENSMEUG00000004686
N
0.929
ZC3H12D
Gasterosteus aculeatus
ENSGACG00000006636
N
0.806
ZC3H12D
Echinops telfairi
ENSETEG00000016119
N
0.889
CPIJ001189
Culex quinquefasciatus
CPIJ001189
N
0.786
AGAP001272
Anopheles gambiae
AGAP001272
N
0.786
AAEL011652
Aedes aegypti
AAEL011652
N
0.786
Ame_R008666
Ailuropoda melanoleuca
Ame_R008666
N
0.926