CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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ENSTNIG00000007696
(
Tetraodon nigroviridis
)
CCCH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
IPR000571
ENSTNIG00000007696
T03489_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSTNIP00000010513
CCCH ZF
16
40
LEVCREFQRGTCSRQDSECKFAHPA
Links
Other
CCCH ZF
family RBPs
Other
Tetraodon nigroviridis
RBPs
4 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
WUBG_11224
Wuchereria bancrofti
WUBG_11224
N
0.808
WUBG_19040
Wuchereria bancrofti
WUBG_19040
N
0.760
e_gw1.28.118.1
Daphnia pulex
e_gw1.28.118.1
N
0.808
gw.81.197.1
Branchiostoma floridae
gw.81.197.1
N
0.800