CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
Home
Tools
Download cart
Bulk downloads
Database stats
Contact us
Help
How to cite
SB09G002390
(
Sorghum bicolor
)
CCCH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
IPR000571
Sb09g002390
T04130_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
Sb09g002390.1
CCCH ZF
272
295
VPCPEFRKGGACRKGDNCEYAHGV
Links
Other
CCCH ZF
family RBPs
Other
Sorghum bicolor
RBPs
55 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
PGTG_05139
Puccinia graminis
PGTG_05139
N
0.000
PGTG_06444
Puccinia graminis
PGTG_06444
N
0.000
PGTG_10181
Puccinia graminis
PGTG_10181
N
0.000
PGTG_15250
Puccinia graminis
PGTG_15250
N
0.000
PTTG_03789
Puccinia triticina
PTTG_03789
N
0.000
PTTG_08079
Puccinia triticina
PTTG_08079
N
0.000
PTTG_09555
Puccinia triticina
PTTG_09555
N
0.000
Glyma10g28100.1
Glycine max
Glyma10g28100.1
N
0.000