CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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e_gw1.5.374.1
(
Trichoplax adhaerens
)
CCCH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
IPR000571
e_gw1.5.374.1
T04926_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
e_gw1.5.374.1
CCCH ZF
198
207
ICPYGRRCTY
e_gw1.5.374.1
CCCH ZF
201
217
YGRRCTYGNKCKYVHPE
Links
Other
CCCH ZF
family RBPs
Other
Trichoplax adhaerens
RBPs
8 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
CpipJ_CPIJ001189
Culex pipiens
CpipJ_CPIJ001189
N
0.741
AAEL011652
Aedes aegypti
AAEL011652
N
0.741
AGAP001272
Anopheles gambiae
AGAP001272
N
0.741
CPIJ001189
Culex quinquefasciatus
CPIJ001189
N
0.741
ZC3H12D
Macropus eugenii
ENSMEUG00000004686
N
0.750
ZC3H12D
Monodelphis domestica
ENSMODG00000016829
N
0.714
ZC3H12D
Taeniopygia guttata
ENSTGUG00000010664
N
0.714
PHUM352150
Pediculus humanus
PHUM352150
N
0.750