ENSPPYG00000016875 (Pongo pygmaeus)
CCHC ZF,CSD

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC)
PF00313 (CSD) 		IPR001878
IPR002059 		ENSPPYG00000016875 T06823_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
LIN28A
M153_0.6 		Homo sapiens YGGAGGR RNAcompete
Ray et al.(2013)
RNCMPT00162 		0.827
LIN28A
M035_0.6 		Homo sapiens HGGAGWA RNAcompete
Ray et al.(2013)
RNCMPT00036 		0.827
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSPPYP00000018894 CSD 25 98
ENSPPYP00000018894 CCHC ZF 123 139
ENSPPYP00000018894 CCHC ZF 145 162

Links

Other CCHC ZF,CSD family RBPs
Other Pongo pygmaeus RBPs

74 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
CSDE1 Canis familiaris ENSCAFG00000009618 N 0.000
CSDE1 Tarsius syrichta ENSTSYG00000003747 N 0.000
CSDE1 Sus scrofa ENSSSCG00000006752 N 0.000
CSDE1 Pteropus vampyrus ENSPVAG00000008225 N 0.000
CSDE1 Pan troglodytes ENSPTRG00000033721 N 0.000
CSDE1 Procavia capensis ENSPCAG00000014368 N 0.000
CSDE1 Oryctolagus cuniculus ENSOCUG00000016438 N 0.000
Csde1 Mus musculus ENSMUSG00000068823 N 0.000
Q3YAQ4_MACMU Macaca mulatta ENSMMUG00000001974 N 0.000
CSDE1 Macropus eugenii ENSMEUG00000002677 N 0.000
CSDE1 Loxodonta africana ENSLAFG00000007150 N 0.000
CSDE1 Gorilla gorilla ENSGGOG00000002164 N 0.000
CSDE1 Homo sapiens ENSG00000009307 N 0.000
CSDE1 Callithrix jacchus ENSCJAG00000012565 N 0.000
CSDE1 Tursiops truncatus ENSTTRG00000015583 N 0.000