CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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29848.m004475
(
Ricinus communis
)
CCHC ZF,RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
PF00076 (RRM_1)
IPR001878
IPR000504
29848.m004475
T07490_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
29848.m004475
RRM
4
63
VYVGNLDPRVTERDLEDEFRRFGVIRSVWVARRPPGYAFIDFDDKRDADDAIHELDGKNG
29848.m004475
CCHC ZF
90
107
LKCYECGEPGHFARECRL
Links
Other
CCHC ZF,RRM
family RBPs
Other
Ricinus communis
RBPs
51 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
SOCG_01961
Schizosaccharomyces octosporus
SOCG_01961
N
0.000