CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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znfl1
(
Danio rerio
)
CCHC ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
IPR001878
ENSDARG00000075996
T10096_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSDARP00000099986
CCHC ZF
452
469
GRCRNCNEEGHWARECKL
Links
Other
CCHC ZF
family RBPs
Other
Danio rerio
RBPs
14 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
BDBG_06539
Blastomyces dermatitidis
BDBG_06539
N
0.000
Pc21g20920
Penicillium chrysogenum
Pc21g20920
N
0.000
e_gw1.00083.499.1
Aspergillus carbonarius
e_gw1.00083.499.1
N
0.000
NFIA_056760
Neosartorya fischeri
CADNFIAG00005317
N
0.000
ATEG_05061
Aspergillus terreus
CADATEAG00003794
N
0.000
ANIA_00592
Aspergillus nidulans
CADANIAG00002082
N
0.000
AFUA_6G11030
Aspergillus fumigatus
CADAFUAG00001799
N
0.000
AFLA_109310
Aspergillus flavus
CADAFLAG00004665
N
0.000
ACLA_084710
Aspergillus clavatus
CADACLAG00007436
N
0.000
TESG_04453
Trichophyton tonsurans
TESG_04453
N
0.000
MGYG_04890
Microsporum gypseum
MGYG_04890
N
0.000
HCAG_09223
Histoplasma capsulatum
HCAG_09223
N
0.000
CPSG_04956
Coccidioides posadasii
CPSG_04956
N
0.000
CIMG_10503
Coccidioides immitis
CIMG_10503
N
0.000
PMAA_052620
Penicillium marneffei
PMAA_052620
N
0.000